| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,086,656 – 12,086,770 |
| Length | 114 |
| Max. P | 0.963086 |
| Location | 12,086,656 – 12,086,770 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.05 |
| Shannon entropy | 0.38403 |
| G+C content | 0.42333 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.73 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12086656 114 - 27905053 AAGCGACACCUAAGGGCCAAAGCGAACAACACUUC------UGCCAUGUCAACUUUAUGUUUGCAAAUGUAAGUGUACUUACUGCAAAUUCUCCUCAAUAGGUGUCGCAAAGUCUAAGUG ..((((((((((..(((..(((.(.....).))).------.))).............(((((((...(((((....)))))))))))).........))))))))))............ ( -34.70, z-score = -3.69, R) >droSim1.chr3R 18138280 119 + 27517382 AAGCGACAUCUAAGGGCCAAAGCGCGCAACAGUUCUGUUAAUGCCAUGUCAACUUUAUGUUU-GCAAUGUAAGCGUACAUAAUGCAAAUUCUUCUCAAUAGGUGUCGCAAAGUCUGAUUG ..((((((((((..(((...((((.((....))..))))...))).............((((-((((((((....)))))..))))))).........))))))))))............ ( -30.10, z-score = -1.19, R) >droSec1.super_12 62170 120 + 2123299 AAGCGACAUCUAAGGGCCAAAGCGCGCAACAGUUCUGUUAAUGCAAUGUCAACUUUCUGUUUGGCAAUGUAUGCGUACAUACUGCAAAUUCUCCUCAAUAGGUGUCGCAAAGUCUGAUUG ..(((((((((((((((....))((((((((....)))).(((((.(((((((.....).)))))).)))))))))................)))...))))))))))............ ( -35.80, z-score = -2.53, R) >droYak2.chr3R 14488951 103 + 28832112 AAGCGACACCUGAGG--UAAUUUGUGGUAC-----------UGCAAUGGGAACUUCAUGUUAAGCAAUGUAA----AGUUAUUGCACACUCCCCUUCAUAGGUGUCGUAAAGUCCAAGUG ..(((((((((((((--....((((.....-----------.)))).((((((.....))...((((((...----...))))))....))))))))..)))))))))............ ( -29.10, z-score = -1.84, R) >consensus AAGCGACACCUAAGGGCCAAAGCGCGCAACAGUUC______UGCAAUGUCAACUUUAUGUUUGGCAAUGUAAGCGUACAUACUGCAAAUUCUCCUCAAUAGGUGUCGCAAAGUCUAAGUG ..(((((((((((((((....))..................(((......(((.....))).......(((((....))))).)))......)))...))))))))))............ (-19.66 = -19.73 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:22 2011