| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,065,602 – 12,065,696 |
| Length | 94 |
| Max. P | 0.885848 |
| Location | 12,065,602 – 12,065,696 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.13 |
| Shannon entropy | 0.17419 |
| G+C content | 0.47879 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -23.09 |
| Energy contribution | -24.62 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12065602 94 - 27905053 CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCCGGAUUCGAAUGCUGCGCUGC ((((((((((....((((......(((....((((((........)))))).....)))(.((((....))))).))))....)))))))))). ( -31.70, z-score = -2.94, R) >droSim1.chr3R 18117486 94 + 27517382 CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCCGGAUUCGAAUGCUGCCCUGC (((.((((((....((((......(((....((((((........)))))).....)))(.((((....))))).))))....)))))).))). ( -27.30, z-score = -1.84, R) >droSec1.super_12 41074 94 + 2123299 CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCCGGAUUCGAAUGCUGCGCUGC ((((((((((....((((......(((....((((((........)))))).....)))(.((((....))))).))))....)))))))))). ( -31.70, z-score = -2.94, R) >droYak2.chr3R 14467376 93 + 28832112 CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCCCCGG-UCCCAAUGCUGCGCUGC ((((((((((................(((..((((((........)))))).....(....).......)))..(.-...)..)))))))))). ( -29.70, z-score = -2.24, R) >droEre2.scaffold_4770 11589937 94 - 17746568 CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCCGGUUCCGAAUGCUGCGCUGC ((((((((((....((((......(((....((((((........)))))).....)))(.((((....))))))))).....)))))))))). ( -30.80, z-score = -2.39, R) >droAna3.scaffold_12911 2890352 86 + 5364042 CAGAGAAGCAAAUAAAUCAAAACAACAG--CGGCGGCGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCUGCAAUCU-GCGCUGC----- ...........................(--((((((((((.....))))).......((.(((((....))))))).....-.))))))----- ( -20.90, z-score = -0.80, R) >consensus CAGUGCAGCAAAUAAAUCACAACAACGGCACGGCGGUGAUAAAAAAUCGCUUUUCACGUGAGAGUAAAAGCUCCGGAUUCGAAUGCUGCGCUGC ((((((((((..................((((..((((((.....)))))).....)))).((((....))))..........)))))))))). (-23.09 = -24.62 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:20 2011