| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,048,097 – 12,048,149 |
| Length | 52 |
| Max. P | 0.880052 |
| Location | 12,048,097 – 12,048,149 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 86.73 |
| Shannon entropy | 0.23660 |
| G+C content | 0.45385 |
| Mean single sequence MFE | -14.82 |
| Consensus MFE | -14.70 |
| Energy contribution | -14.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.880052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12048097 52 + 27905053 AGCAAUUGUAUGUGUAUGCUGUGGCACAUACAGUGAAAGCUCUAACAAAUGC (((.(((((((((((........)))))))))))....)))........... ( -14.80, z-score = -1.29, R) >droSim1.chr3R 18089124 52 - 27517382 AGCGAUUGUAUGUGUACGCUGUGGCACAUACAGUGAAAGCUCUAACAAAUGC (((.(((((((((((........)))))))))))....)))........... ( -14.80, z-score = -1.22, R) >droSec1.super_219 6902 52 - 23606 AGCGAUUGUAUGUGUAUGCUGUGGCACAUACAGUGAAAGCUCCAACAAAUGC (((.(((((((((((........)))))))))))....)))........... ( -14.80, z-score = -1.22, R) >droEre2.scaffold_4770 11571757 52 + 17746568 AGCAACUGUAUGUGUAAGCUGUGGCACAUACAGUGAAAGCUCUCACAAAUGC (((.(((((((((((........)))))))))))....)))........... ( -17.10, z-score = -1.94, R) >droAna3.scaffold_12911 2869560 52 - 5364042 UGCAGCUGUAUGCGUAGGUACUGGCACAUACAGUGAAAGCCCCCACUAACGC .((.((((((((.((........)).))))))))....))............ ( -12.60, z-score = 0.36, R) >consensus AGCAAUUGUAUGUGUAUGCUGUGGCACAUACAGUGAAAGCUCUAACAAAUGC .((.(((((((((((........)))))))))))....))............ (-14.70 = -14.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:16 2011