| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,042,800 – 12,042,902 |
| Length | 102 |
| Max. P | 0.585906 |
| Location | 12,042,800 – 12,042,902 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 88.38 |
| Shannon entropy | 0.18859 |
| G+C content | 0.59897 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -19.70 |
| Energy contribution | -19.20 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12042800 102 + 27905053 CUCUCCUUCCGCUGCAUCACUUUCACGUCCUUCCCGGGGAUCCUAACCCC--AACCACC---CCCCCACACGUAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAGC ..........(((((....................((((.......))))--.......---...(((.((......((....)).....)).)))......))))) ( -20.80, z-score = -1.02, R) >droSim1.chr3R 18083858 98 - 27517382 UCCCCCUUCCGCUGCAUCACUUUCACGUCCUACCCGGGGAUCCUAACCCC--AAC-------CCCCCACACGCAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAGC ..........(((((....................((((.......))))--...-------...(((.((.((...((....))..)).)).)))......))))) ( -22.00, z-score = -1.45, R) >droYak2.chr3R 14443531 107 - 28832112 CACCCCAUCCGCUGCAUCACUUUCACGUCCUUUCCGGGGAUCCUAACCCCCAAACUCCCUGCCUCCCGCACGUAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAGC ..........(((((....................((((........))))........((((.....((.(.....((....)).))).....))))....))))) ( -22.50, z-score = -0.93, R) >droEre2.scaffold_4770 11566459 107 + 17746568 ACCUCCUUCCGCUGCAUCACUUUCACGUCCUUCCCGGGGACCCUAACCCCCAAACCCCCUACCCCCCGCACGCAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAGC ..........(((((....................((((........))))..............(((.((.((...((....))..)).)).)))......))))) ( -22.00, z-score = -1.14, R) >consensus CCCCCCUUCCGCUGCAUCACUUUCACGUCCUUCCCGGGGAUCCUAACCCC__AACCCCC___CCCCCACACGCAAUUCCUUCUGGUCUGAGUCUGGCAAACCGCAGC ..........(((((....................((((.......))))...............(((.((.((...((....))..)).)).)))......))))) (-19.70 = -19.20 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:14 2011