| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,602,717 – 7,602,801 |
| Length | 84 |
| Max. P | 0.622894 |
| Location | 7,602,717 – 7,602,801 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 68.38 |
| Shannon entropy | 0.44159 |
| G+C content | 0.29739 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -9.08 |
| Energy contribution | -8.87 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7602717 84 - 23011544 AUCUGAGUUAUCUGAGUUUAUGUUUUGGGACAGUCGAUUUUCUUAAUCGUUUUACUUGGAGAUUAAAUUAUAACCGUUUGUUAU-- ....(.(((((...((((((..(((..((.....(((((.....))))).....))..)))..)))))))))))).........-- ( -12.50, z-score = 0.32, R) >droYak2.chr2L 17031572 83 + 22324452 ---AUGUUAAGCUGAGUUUAAGUUUUAGUACAGUCGAUUUUCCUAAUCGCUGCAAUUGAAGAUUAAAUUAUUAAUAGCCGUUUUCA ---.((((((....(((((((.(((((((.(((.(((((.....))))))))..))))))).))))))).)))))).......... ( -16.60, z-score = -2.04, R) >droEre2.scaffold_4929 16521979 75 - 26641161 ---AUGGAUAUGGUAGUUUAAGUUUUAGUACAGUCGAUUUUCCUAAUCGCUUCGCUUGAAGAUUAAAUUAUUAUGAAA-------- ---.....(((((((((((((.(((((((..((.(((((.....)))))))..)).))))).)))))))))))))...-------- ( -16.70, z-score = -2.27, R) >consensus ___AUGGUUAUCUGAGUUUAAGUUUUAGUACAGUCGAUUUUCCUAAUCGCUUCACUUGAAGAUUAAAUUAUUAACAAA_GUU_U__ ..............(((((((.(((((((..((.(((((.....)))))))...))))))).)))))))................. ( -9.08 = -8.87 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:01 2011