| Sequence ID | dm3.chr3R |
|---|---|
| Location | 12,019,837 – 12,019,932 |
| Length | 95 |
| Max. P | 0.661435 |
| Location | 12,019,837 – 12,019,932 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 71.75 |
| Shannon entropy | 0.48992 |
| G+C content | 0.39721 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -11.84 |
| Energy contribution | -11.87 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 12019837 95 - 27905053 AUGGCUAUUUUAUUUUUUGUUGACUUU--CACC-UCAACGCAGGUCAGCAGAGCAACAACAGUAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAA---------- .(((((.(((((((((((((((((((.--(...-.....).))))))))))))........((.(((......))).))))))))).....)))))..---------- ( -24.20, z-score = -2.46, R) >droSim1.chr3R 18061028 95 + 27517382 AUGGCCAUUUUCUUUUUUGUUGACUUU--CACC-UCAACGCAGGCGAGCAGAGCAACAACAGCAAGCGGCGUAGCUAACAAUAAAAACAAAGGCCAAA---------- .(((((..........((((((.((((--(.((-(......))).))...))))))))).....(((......)))...............)))))..---------- ( -22.90, z-score = -0.98, R) >droSec1.super_0 11180858 95 + 21120651 AUGGCCAUUUUCUUUUUUGUUGACUUU--CACC-UCAACGCAGGCGAGCAAAGCAACAACAGCAAGCGCCGUAGCUAACAAUAAAAACAAAGGCCAAA---------- .(((((............(((((....--....-)))))((.((((.((............))...))))...))................)))))..---------- ( -22.90, z-score = -1.47, R) >droYak2.chr3R 14420444 91 + 28832112 AUGGCCAU----UUUUUUGUUGACUUU--UACC-UCGACGCAGAGGAGUAGAGCAAAAACAGCAAGCGGGGUAGCUAACAAUAAAAACAAAGGCCAAA---------- .(((((.(----((((((((((....(--((((-(((((........))...((.......))...))))))))....))))))))).)).)))))..---------- ( -26.00, z-score = -2.75, R) >dp4.chr2 4750649 105 + 30794189 -UUGC-UCCUUUAUUUUUGUUGUUUUUUCCACCUUUAGAGCACAAAAGCAUAGAGCCAAAAAAGAGAGA-GCGGCCAACAAUAAAAACAAUGGCUGAAUAAAAACAGA -..((-((((((..((((((.(((((..........)))))))))))((.....))......)))).))-))(((((.............)))))............. ( -19.32, z-score = -0.62, R) >droPer1.super_6 4766008 106 + 6141320 -UUGCUUCUUUUUUUUUUGUUGUUUUUUCCACCUUUAGAGCACAAAAGCAUAGAGCCAAAAAAGAGUGA-GCGGCCAACAAUAAAAACAAUGGCUGAAUAAAAACAGA -(..((.(((((((((((((.(((((..........)))))))))))((.....)).)))))))))..)-.((((((.............))))))............ ( -19.32, z-score = 0.14, R) >consensus AUGGCCAUUUUCUUUUUUGUUGACUUU__CACC_UCAACGCAGAAGAGCAGAGCAACAACAGCAAGCGACGUAGCUAACAAUAAAAACAAAGGCCAAA__________ .(((((.......(((((((((.................((......))................((......))...)))))))))....)))))............ (-11.84 = -11.87 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:10 2011