| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,962,829 – 11,962,919 |
| Length | 90 |
| Max. P | 0.677368 |
| Location | 11,962,829 – 11,962,919 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 92.73 |
| Shannon entropy | 0.12339 |
| G+C content | 0.51553 |
| Mean single sequence MFE | -21.79 |
| Consensus MFE | -15.05 |
| Energy contribution | -15.89 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11962829 90 + 27905053 CUUCGAGCCCCCUCUUCACUUUUUCUCGCUCACCAGGCCUCUUUCACUAUCUCAAAAGAUGCCGCCAG-CCCAGCUUCAUCUGGGCU-GUAU ....((((...................))))....(((.(((((..........))))).)))..(((-(((((......)))))))-)... ( -25.51, z-score = -3.89, R) >droEre2.scaffold_4770 11486704 90 + 17746568 CUUCGAGCCCCUUCUCCAAUUUUUCUCGCUCACUAUCCCUCUUUCACUAUCUCAAAAGAUGCCGCCAG-CCCAGCUUCAUCUGGGCG-GUUU ....((((...................))))................(((((....)))))..(((.(-(((((......)))))))-)).. ( -18.51, z-score = -1.96, R) >droYak2.chr3R 14363026 91 - 28832112 CUUCGAGCCCCUUCUUCAAUUUUUCUCGCUCACUAUCCCUCUUUCACUAUCUCAAAAGAUGCCGCCAG-CCCAGCUUCAUCUGGGUUUGUAU ....((((...................))))................(((((....)))))..((.((-(((((......))))))).)).. ( -15.81, z-score = -1.85, R) >droSec1.super_0 11123409 91 - 21120651 CUUCGAGCCCCUUCUUCACUUUUUCUCGCUCGCCAGGCCUCUUUCACUAUCUCAAAAGAUGCCGCCAGGCCCAGCUUCAUCUGGGCU-GUAU ...(((((...................)))))...(((.(((((..........))))).)))....(((((((......)))))))-.... ( -23.91, z-score = -1.91, R) >droSim1.chr3R 18003299 90 - 27517382 CUUUGAGCCCCUUCUUCACUUUUUCUCGCUCGCCAGGCCUCUUUCACUAUCUCAAAAGAUGCCGCCAG-CCCAGCUUCAUCUGGGCU-GUAA ....((((...................))))....(((.(((((..........))))).)))..(((-(((((......)))))))-)... ( -25.21, z-score = -2.92, R) >consensus CUUCGAGCCCCUUCUUCACUUUUUCUCGCUCACCAGGCCUCUUUCACUAUCUCAAAAGAUGCCGCCAG_CCCAGCUUCAUCUGGGCU_GUAU ....((((...................))))....(((.(((((..........))))).)))((.((.(((((......))))))).)).. (-15.05 = -15.89 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:03 2011