| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,961,074 – 11,961,168 |
| Length | 94 |
| Max. P | 0.570121 |
| Location | 11,961,074 – 11,961,168 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.88 |
| Shannon entropy | 0.37675 |
| G+C content | 0.45884 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -12.44 |
| Energy contribution | -13.48 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11961074 94 + 27905053 UUUCGAAACUCU----GAUUUUUUUGCCGCGAUUGAGG-CCCUCAUUUAUGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU---AACUUCCUCA ....(((.((((----((.....((((((..(.((((.-..)))).)..))).))).)))))).((((((((.(((....))).)))))---)))))).... ( -28.90, z-score = -2.47, R) >droSim1.chr3R 18001576 98 - 27517382 UUUCGAAACUCUGCUUCUUUUUUUUGCCGUGAUUGAGG-CCCUCAUUUACGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU---AACUUCCUCA ....(((.....(((((......(((((((((.((((.-..)))).)))))).)))...)))))((((((((.(((....))).)))))---)))))).... ( -32.90, z-score = -3.90, R) >droSec1.super_0 11121686 97 - 21120651 UUUCGAAACUGC-UUCUUUUUUUUUGCCGUGAUUGAGG-CCCUCAUUUACGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU---AACUUCCUCA ....(((...((-(((.......(((((((((.((((.-..)))).)))))).)))...)))))((((((((.(((....))).)))))---)))))).... ( -32.30, z-score = -3.67, R) >droYak2.chr3R 14361235 94 - 28832112 UUUCGAAACUCU----UUUUUUUUUGCCUCGAUUGAGG-CCCUCAUUUACGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU---AACUUCCUCA ....(((.....----.........(((((....))))-)((........))....)))((((.((((((((.(((....))).)))))---)))))))... ( -27.50, z-score = -2.81, R) >droEre2.scaffold_4770 11485010 92 + 17746568 UUUCGAAACUUU------GUUUUUUGCCUUCAUUGAAG-CCCUCACUUACGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU---AACUUCCUCA ....((......------.....(((((.....(((..-...))).....)).)))...((((.((((((((.(((....))).)))))---))))))))). ( -21.30, z-score = -1.11, R) >dp4.chr2 4686661 101 - 30794189 UCGUACUACUACCCGUACUCUUUCCCAAUCAUUUAUGG-CCCUAAUUUAUGGUCAAUUCGUAUCGUUACGGUUACGCACGUGUUGCGGUGGUAACUUCCUCA ......(((((((.(((..................(((-((.........)))))..(((((....))))).)))(((.....))))))))))......... ( -19.80, z-score = -0.36, R) >droPer1.super_6 4702673 102 - 6141320 UCGUACUACUACCCGUACUCUUUCCCAAUCAUUUAUGGGCCCUAAUUUAUGGUCAAUUCGUAUCGUUACGGUUACGCACGUGUUGCGGUGGUAACUUCCUCA ...((((((...(((((......((((........))))........(((((.....)))))....)))))...((((.....))))))))))......... ( -21.20, z-score = -0.31, R) >consensus UUUCGAAACUCU____AUUUUUUUUGCCUCGAUUGAGG_CCCUCAUUUACGGUCAAUUCGGAGCGUUACGGUUACGCACGUGUUGCCGU___AACUUCCUCA .................................(((((..........((((.((((.((..((((.......)))).)).))))))))........))))) (-12.44 = -13.48 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:02 2011