| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,957,599 – 11,957,707 |
| Length | 108 |
| Max. P | 0.956419 |
| Location | 11,957,599 – 11,957,707 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 51.83 |
| Shannon entropy | 0.64728 |
| G+C content | 0.52074 |
| Mean single sequence MFE | -34.30 |
| Consensus MFE | -15.01 |
| Energy contribution | -17.13 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11957599 108 + 27905053 UAACUUGGCUACUUGGCUGCUUGGCCGCUUGGCUAACUGGCCGAGUGGCAGCCUGAGCAGCUCCAACCUGAUCCACGGAGCGGACUCCCCACGAUCCGAUCGGCCAGC------ ....((((((..((((((((((.(((((((((((....))))))))))).....)))))))........((((...((((....))))....)))))))..)))))).------ ( -47.20, z-score = -2.70, R) >droYak2.chr3R 14357962 99 - 28832112 ---------UAACUGGCUACUUGGCUAACUGGCAAACUGGCAAACAGGCAGCCUGGGCAGCUCCAACCUGUUCGAUGGAGCGGACUCCCCACGAUCCGAUCGGCCAGC------ ---------...((((((..((((......(((...(((.....)))...)))((((..((((((.(......).))))))......))))....))))..)))))).------ ( -34.60, z-score = -1.00, R) >droWil1.scaffold_181130 8774650 101 - 16660200 --------UUUCAGAUCUGUUUGGAGAA--GGUUAAAUG--CAAUUUUCAUUUUGUAUAAC-CCGACAUAAUUCGUGGCUAAAAGAGCCAAUUAUUCAAAAGUUUGACUCAGCA --------..((((((...((((((...--(((((..((--(((........)))))))))-)(((......)))(((((.....)))))....)))))).))))))....... ( -21.10, z-score = -1.29, R) >consensus _________UACAUGGCUGCUUGGCCAA_UGGCUAACUGGCCAACUGGCAGCCUGAGCAGCUCCAACCUGAUCCAUGGAGCGGACUCCCCACGAUCCGAUCGGCCAGC______ ............((((((..((((((((.((((......)))).)))))..........(((((............)))))...............)))..))))))....... (-15.01 = -17.13 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:01 2011