| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,951,392 – 11,951,482 |
| Length | 90 |
| Max. P | 0.822480 |
| Location | 11,951,392 – 11,951,482 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.27642 |
| G+C content | 0.37440 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -17.98 |
| Energy contribution | -18.07 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11951392 90 - 27905053 ------------------------------CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -1.85, R) >droSim1.chr3R 17992019 90 + 27517382 ------------------------------CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -1.85, R) >droSec1.super_0 11112054 90 + 21120651 ------------------------------CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -1.85, R) >droYak2.chr3R 14350937 90 + 28832112 ------------------------------CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -1.85, R) >droEre2.scaffold_4770 11475371 90 - 17746568 ------------------------------CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -1.85, R) >droAna3.scaffold_13340 2075659 90 + 23697760 ------------------------------CUUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ------------------------------....(((((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......)))))))).)))))).. ( -21.90, z-score = -2.08, R) >droPer1.super_6 4693067 119 + 6141320 CGCUCUGGGCUGGGGGCUGGAGGCUCUCUUGGCCAU-CCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ....(((((((((((((.....))))))..))))..-((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......))))))))))).))).. ( -38.50, z-score = -2.14, R) >dp4.chr2 4677250 119 + 30794189 CGCUCUGGGCUGGGGGCUGGAGGCUCUCUUGGCCAU-CCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ....(((((((((((((.....))))))..))))..-((((((((...((((((((((((((.(((....)))))))))..)))))))).....(((......))))))))))).))).. ( -38.50, z-score = -2.14, R) >droVir3.scaffold_13047 15236552 88 + 19223366 ------------------------------GGCAGUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCACACACAGAU--GACAUGGGUCAGUA ------------------------------...(.((((((((((...((((((((((((((.(((....)))))))))..))))))))...............--))))).))))).). ( -20.37, z-score = -1.34, R) >droMoj3.scaffold_6540 13161992 87 + 34148556 ------------------------------GGCAUU-GCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCACACACAUAU--GACAUGGGUCAGUA ------------------------------(((...-.(((((((...((((((((((((((.(((....)))))))))..))))))))...............--)))))))))).... ( -19.27, z-score = -1.59, R) >droGri2.scaffold_14906 13536255 80 + 14172833 --------------------------------------CCCUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCACACACAUAU--GACAUGGGUCAGUA --------------------------------------(((((((...((((((((((((((.(((....)))))))))..))))))))...............--)))).)))...... ( -16.17, z-score = -1.56, R) >consensus ______________________________CGUCUUGGCCAUGUCUUUAUUUAAUAGUUGUGUAAGUAUUUUUCACAGCAAUAUUGAAUUUUCCGCACACACAUGUGACAUGGGUCAGUA ......................................(((((((...((((((((((((((.(((....)))))))))..)))))))).................)))))))....... (-17.98 = -18.07 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:01 2011