| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,950,663 – 11,950,718 |
| Length | 55 |
| Max. P | 0.922769 |
| Location | 11,950,663 – 11,950,718 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.07375 |
| G+C content | 0.32727 |
| Mean single sequence MFE | -7.28 |
| Consensus MFE | -7.31 |
| Energy contribution | -7.12 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.39 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11950663 55 - 27905053 AAUGGGCAUGACAACAGGAAGCCAAAAUUAUUACGCAAGAAAUAGAAUAUUGUAU ....(((.(..(....)..))))....(((((.(....).))))).......... ( -6.50, z-score = -0.89, R) >droEre2.scaffold_4770 11474624 55 - 17746568 AAAGGGCAUGACAUCAGGAAGCCAUAACUAUUACGCAAGAAAUAGAAUAUUGUAU ....(((.((....))....)))....(((((.(....).))))).......... ( -9.60, z-score = -2.20, R) >droSec1.super_0 11111315 55 + 21120651 AAUGGGCAUGACAACAGGAAGCCAAAAUUAUUACGAAAGAAAUAGAAUAUUGUAU ....(((.(..(....)..))))....(((((.(....).))))).......... ( -6.50, z-score = -1.57, R) >droSim1.chr3R 17991299 55 + 27517382 AAUGGGCAUGACAACAGGAAGCCAAAAUUAUUACGCAAGAAAUAGAAUAUUGUAU ....(((.(..(....)..))))....(((((.(....).))))).......... ( -6.50, z-score = -0.89, R) >consensus AAUGGGCAUGACAACAGGAAGCCAAAAUUAUUACGCAAGAAAUAGAAUAUUGUAU ....(((.(..(....)..))))....(((((.(....).))))).......... ( -7.31 = -7.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:19:00 2011