| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,933,831 – 11,933,926 |
| Length | 95 |
| Max. P | 0.573797 |
| Location | 11,933,831 – 11,933,926 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.01 |
| Shannon entropy | 0.31103 |
| G+C content | 0.58881 |
| Mean single sequence MFE | -34.70 |
| Consensus MFE | -17.83 |
| Energy contribution | -19.30 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11933831 95 - 27905053 ACACUUUCCCCCACUCCGGCA--------------GCAAUUAGCCGCCGGAUUCGAGAGCC-AUCUAUUCCCCAUUCGAUUGGA------UGGAUGGAUGUGGGGCUACCGCAGAG ........((((((((((((.--------------((.....)).))))))........((-((((((...(((......))))------)))))))..))))))........... ( -37.20, z-score = -2.89, R) >droSim1.chr3R 17974470 95 + 27517382 ACACUUUCCCCCACUCCGGCA--------------GCAAUUAGCCGCCGGAUUCGAGAGCC-AUCUAUUCCCCAUUCGAUUGGA------UGGACGGACGUGGGGCUACCGCAGAG ........((((((((((((.--------------((.....)).))))))((((....((-(((((.((.......)).))))------))).)))).))))))........... ( -37.20, z-score = -3.16, R) >droSec1.super_0 11094644 95 + 21120651 ACACUUUCCCCCACUCCGGCA--------------GCAAUUAGCCGCCGGAUUCGAGAGCC-AUCUAUUCCCCAUUCGAUUGGA------CGGAUGGACGUGGGGCUACCGCAGAG ........((((((((((((.--------------((.....)).)))))).......(((-((((.....(((......))).------.)))))).)))))))........... ( -34.90, z-score = -2.43, R) >droEre2.scaffold_4770 11457609 91 - 17746568 ACACUUUCCCCCACUCCGGCA--------------GCAAUUAGCCGCCGGAUUCGAGAGCC-AUCUAUUCCCCAUUCGAU----------UGGACGGACGUGGGGCUACCGCAGAG ........((((((((((((.--------------((.....)).))))))(((((((...-.))).....(((......----------))).)))).))))))........... ( -31.30, z-score = -2.21, R) >droYak2.chr3R 14331672 101 + 28832112 ACACUUUCCCCCACUCCGGCA--------------GCAAUUAGCCCCCGGAUUUGAGAGCC-AUCUAUUCCCCAUUCGAUUGGACGGACGUGGACGGACGUGGGGCUACCGCAGAG ........(((((((((((..--------------((.....))..))))).......(((-.(((((((((((......)))..))).))))).)).)))))))........... ( -33.10, z-score = -1.13, R) >droAna3.scaffold_13340 2056425 102 + 23697760 ACACUUUCCCCCACUCCAGCACUCCAGCGGCAGCGGCAAUUAGCCGCCCGAUUGGACAGCCGAUCAAAUCCCCAUUGGAUCACA-----GAGGAUGGGAGCCAGGCU--------- ...((..(.((((.(((.((..((((((((..(((((.....)))))))).)))))..)).((((.(((....))).))))...-----..))))))).)..))...--------- ( -34.50, z-score = -1.66, R) >consensus ACACUUUCCCCCACUCCGGCA______________GCAAUUAGCCGCCGGAUUCGAGAGCC_AUCUAUUCCCCAUUCGAUUGGA______UGGACGGACGUGGGGCUACCGCAGAG ........((((((((((.................((.....))..(((((....(((.....)))..)))(((......)))........)).)))).))))))........... (-17.83 = -19.30 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:54 2011