| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,921,238 – 11,921,336 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 11,921,238 – 11,921,336 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 56.89 |
| Shannon entropy | 0.83337 |
| G+C content | 0.32214 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -3.28 |
| Energy contribution | -2.87 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.18 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 11921238 98 - 27905053 AAAUGAUGUUCUAAGCUGAAAUUGUACUUUUUAAAUUAGAAAAUCGGUUUCACCGCAUACUUUUGGAAUCAUAUUGAUGAUUCUUCUGGUAUUCUCGU ....(((.((((((..(((((.......)))))..)))))).)))((.....))(.(((((...((((((((....))))))))...))))).).... ( -22.80, z-score = -2.84, R) >droSim1.chr3R 17961908 98 + 27517382 AAAUUAUGUUCUAAGCUGAGAAUGUACUUUUUAAAUUAGAAAAUCGGUUUCACUACAUACUAUUGGAAUCAUAGUGAUGAUUCUUCUGGUAUUCCCGU ........((((((..((((((.....))))))..))))))...(((.........((((((..((((((((....))))))))..))))))..))). ( -19.80, z-score = -1.45, R) >droSec1.super_0 11082119 98 + 21120651 AAAUGAUGUUCUAAGCUGAGAAUGUACUUUUUAAAUUAGAAAAUCGGUUUCACUACAUACUAUUGGAAUCAUAGUGAUGAUUCUUCUGGUAUUCCCGU ...((((.((((((..((((((.....))))))..)))))).))))..........((((((..((((((((....))))))))..))))))...... ( -22.90, z-score = -2.28, R) >droYak2.chr3R 14318867 98 + 28832112 AAAUGAUGUUCUAAACUGACAAUGCGCUUCUUAAAUUACAAAAUCGGUUUCUUUAUUAACUAUAGGAAUCAUAGUGAUGACUGUUCUGGUAGUCCCGU ...(((((....(((((((...((..............))...)))))))...)))))(((((.(((...(((((....)))))))).)))))..... ( -11.74, z-score = 1.32, R) >dp4.chr2 4645065 76 + 30794189 -------------AACCGAACAAA-ACUAUUCGCUUUUUG--UUUGGUCUCUCCAUUCCCAAUAGGGAUUAAAAU----AUUCUUUAUGGGUUCUC-- -------------.((((((((((-(.........)))))--)))))).........((((..((((((......----))))))..)))).....-- ( -18.30, z-score = -3.03, R) >droPer1.super_6 4661532 76 + 6141320 -------------AACCGAACAAA-ACUAUUCGCUUUUUG--UUUGGUCUCUCCAUUCCCAAUAGGGAUUCAAAU----AUUCUUUAUGGCUUCUC-- -------------.((((((((((-(.........)))))--))))))....((((((((....)))).......----.......))))......-- ( -15.43, z-score = -2.57, R) >droVir3.scaffold_13047 12687201 94 - 19223366 CGAAAUUAAUUUAAGCUGUUGUAAGAUGAACUAUACUUAA----UAGAGGCAAACCAAAUUCUUGGAAUCAUUUUGAAUAUUCAGCUUUUAUUUUUGU (((((.(((...((((((...((((((((.((((.....)----))).......((((....))))..))))))))......))))))))).))))). ( -18.90, z-score = -2.03, R) >consensus AAAUGAUGUUCUAAGCUGAAAAUGUACUUUUUAAAUUAGAAAAUCGGUUUCACCACAUACUAUUGGAAUCAUAGUGAUGAUUCUUCUGGUAUUCUCGU .............................................(((((((...........)))))))............................ ( -3.28 = -2.87 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:53 2011