| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,920,446 – 11,920,499 |
| Length | 53 |
| Max. P | 0.652956 |
| Location | 11,920,446 – 11,920,499 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 73.59 |
| Shannon entropy | 0.50557 |
| G+C content | 0.47794 |
| Mean single sequence MFE | -10.95 |
| Consensus MFE | -6.14 |
| Energy contribution | -6.07 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11920446 53 - 27905053 AUCCGUGGAUUUUCACGAUCCGUGAGUUUGCCUCUAGCCAAAACAC--CAAACCU- .....(((....(((((...)))))((((((.....))..)))).)--)).....- ( -8.20, z-score = -0.74, R) >droSim1.chr3R 17961119 53 + 27517382 AUCCGUGGAUUUUCACGAUCCGUGAGUUUGCCUCUGGCCAAAACAC--CAAACCU- .....(((....(((((...)))))(((((((...)))..)))).)--)).....- ( -10.40, z-score = -0.75, R) >droSec1.super_0 11081334 53 + 21120651 AUCCGUGGAUUUUCACGAUCCGUGAGUUUGCCUCUGGCCAAAACAC--CAAACCU- .....(((....(((((...)))))(((((((...)))..)))).)--)).....- ( -10.40, z-score = -0.75, R) >droEre2.scaffold_4770 11444126 53 - 17746568 AUCCAUGGAUUUUCACGAUCCGUGAGUUUGCCUCUAGCCAAAACAC--CAAGCCU- ...((((((((.....)))))))).((((((.....))..))))..--.......- ( -10.30, z-score = -1.65, R) >droAna3.scaffold_13340 2042881 56 + 23697760 AUCCAUGGAUCUCCACGAUCCAUGAGUUCGCCUCUGGCCAAAGCACGACAAAGCCA ...((((((((.....)))))))).(((.(((...)))...)))............ ( -14.30, z-score = -1.60, R) >droWil1.scaffold_181130 8734169 54 + 16660200 GCAAAUGGAAAAACUCGAACUGCAUUUUGGUAUGCAGUUAAAAACAUGCAGCCC-- (((....((.....)).((((((((......)))))))).......))).....-- ( -12.10, z-score = -1.39, R) >consensus AUCCAUGGAUUUUCACGAUCCGUGAGUUUGCCUCUAGCCAAAACAC__CAAACCU_ ...((((((((.....)))))))).((((((.....))..))))............ ( -6.14 = -6.07 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:52 2011