| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,907,746 – 11,907,848 |
| Length | 102 |
| Max. P | 0.568751 |
| Location | 11,907,746 – 11,907,848 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.91 |
| Shannon entropy | 0.36844 |
| G+C content | 0.48131 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -17.16 |
| Energy contribution | -18.02 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11907746 102 + 27905053 AGAUCAGGAAAUCCUUGAUCCCCCGCAGUC-AUAGUCAUCAUUACC--AUGAUCGUGACAGAAGCUGCUGUAACGAUGUCAUUGGGGCUUCCCUUAACUUACCGC .(((((((.....)))))))....((.(((-(..(((((.......--)))))..)))).((((((.(.((.((...)).)).).))))))............)) ( -26.60, z-score = -1.27, R) >droSim1.chr3R 17948644 102 - 27517382 AGAUCAGGAAAUCCUUGAUCCCCCGCAGUC-AUAGUCAUCAUUACC--AUGAUCGUGACAGAAGCUGCUGUAACGAUGUCAUUGGGGCUUCCCUUAACUUACCGC .(((((((.....)))))))....((.(((-(..(((((.......--)))))..)))).((((((.(.((.((...)).)).).))))))............)) ( -26.60, z-score = -1.27, R) >droSec1.super_0 11068974 102 - 21120651 AGAUCAGGAAAUCCUUGAUCCUCCGCAGUC-AUAGUCAUCAUUACC--AUGAUCGUGACAGAAGCGGCUGUAACGAUGUCAUUGGGGCUUCCCUUAACUUACCGC .(((((((.....)))))))....((.(((-(..(((((.......--)))))..))))..(((.((..((..((((...))))..))..)))))........)) ( -25.70, z-score = -0.56, R) >droYak2.chr3R 14304964 90 - 28832112 AGAUCAGGAAAUCCUUGAUCCCC--------GCAGUCAUUAUUACC--AUGAUCGUGACAGAAGCUGCAGUAACGAUGUCAUUGGGGCUUCCCUUACCGA----- .(((((((.....)))))))...--------...(((((.(((...--..))).))))).((((((.((((.((...)).)))).)))))).........----- ( -25.00, z-score = -1.49, R) >droEre2.scaffold_4770 11431221 90 + 17746568 AGAUCAGGAAAUCCUUGAUCCCC--------GCAGCCAUCAUUACC--AUGAUCGUGACAGAAGCUGCAGUAACGAUGUCAUUGGGGCUUCCCUUACAGU----- .(((((((.....)))))))...--------......(((((....--))))).((((..((((((.((((.((...)).)))).))))))..))))...----- ( -24.40, z-score = -1.17, R) >droAna3.scaffold_13340 2029084 100 - 23697760 AGUUCAGGAAAUCCCUAUCCAAGAACCCCCCACAAAAAUCAUUACCCAGAGAUCGUGCCAGAAUCAUCUGUAACGAUGUCAUUGGGGCUUCCCAUGUGGC----- .((((.(((........)))..))))...(((((..............((.(((((..((((....))))..))))).))..((((....))))))))).----- ( -28.70, z-score = -2.58, R) >consensus AGAUCAGGAAAUCCUUGAUCCCCCGCAGUC_ACAGUCAUCAUUACC__AUGAUCGUGACAGAAGCUGCUGUAACGAUGUCAUUGGGGCUUCCCUUAACGU_____ .(((((((.....)))))))...............................(((((.((((......)))).)))))......(((....)))............ (-17.16 = -18.02 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:52 2011