| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,894,972 – 11,895,080 |
| Length | 108 |
| Max. P | 0.736751 |
| Location | 11,894,972 – 11,895,080 |
|---|---|
| Length | 108 |
| Sequences | 11 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Shannon entropy | 0.19816 |
| G+C content | 0.50969 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -25.71 |
| Energy contribution | -25.57 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11894972 108 - 27905053 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCCAACAAACCGGACACAAAACCUGCAGC--------- ......((((((.......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).))).....)))))).--------- ( -28.02, z-score = -1.24, R) >droGri2.scaffold_14906 13471286 108 + 14172833 UUCUUAUUAUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUACAUAAGCUGGCAAUGGCGGCUAAAGCCAUACCGGACUCCAAGCCGGACACAAAACCUGCAGC--------- ((((......)))).....(((..((((((((.(((((.............)).))).))))))))..........((((........)))).)))............--------- ( -27.32, z-score = -1.35, R) >droMoj3.scaffold_6540 13098577 108 + 34148556 UUCUUAUUAUAGAAUAACAGUGACGUCGCCAUCGUCGCCACAUAUUCACAAACUGGCACUGGCGGCUAAAGCCAUACCGGACCAAAAACCGGACACGAAAUCUUCAGC--------- ((((......)))).....(((..(((((((..((.((((.............)))))))))))))..........((((........)))).)))............--------- ( -26.32, z-score = -2.22, R) >droWil1.scaffold_181130 8705499 111 + 16660200 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACAUAUACAUAAAUUGGCACUGGCGGCCAAAGCCAUACCGGCUCCAAAACCGGACACGAAAUCUGCACUGGC------ .......((((((......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).)))....)))))).....------ ( -30.32, z-score = -1.56, R) >droPer1.super_6 4632080 108 + 6141320 UUCUUAUUGUAGAAUAACAGUGACGUCGCCGUCGUCGCCACACAUUCAUAAAAUGGCACUGGCGGCCAAAGCCAUACCGGCCACCAAACCGGACACAAAAUUAGCAGA--------- ...(((((((......))))))).((((((((((..((((.............))))..)))))))....(((.....)))..........)))..............--------- ( -26.72, z-score = -1.08, R) >dp4.chr2 4615464 108 + 30794189 UUCUUAUUGUAGAAUAACAGUGACGUCGCCGUCGUCGCCACACAUUCAUAAAAUGGCACUGGCGGCCAAAGCCAUACCGGCCACCAAACCGGACACAAAAUUAGCAGA--------- ...(((((((......))))))).((((((((((..((((.............))))..)))))))....(((.....)))..........)))..............--------- ( -26.72, z-score = -1.08, R) >droAna3.scaffold_13340 2016111 117 + 23697760 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCGCACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGACCCAGAGCCGGACACAAAAACAGCAGCUGCAGCGGC .....(((((......)))))((((.......))))(((((..........((((((.((((.(.((...........)).))))).))))).).........((....)).))))) ( -33.80, z-score = -0.41, R) >droEre2.scaffold_4770 11418551 108 - 17746568 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCACACAAACCGGACACAAAACCUGCAGC--------- ......((((((.......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).))).....)))))).--------- ( -28.02, z-score = -1.25, R) >droYak2.chr3R 14292128 108 + 28832112 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCCCACAAACCGGACACAAAACCUGCAGC--------- ......((((((.......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).))).....)))))).--------- ( -28.02, z-score = -1.14, R) >droSec1.super_0 11056198 108 + 21120651 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCCAACAAACCGGACACAAAACCUGCAGC--------- ......((((((.......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).))).....)))))).--------- ( -28.02, z-score = -1.24, R) >droSim1.chr3R 17936067 108 + 27517382 UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCCAACAAACCGGACACAAAACCUGCAGC--------- ......((((((.......(((..(((((((..((.((((.............)))))))))))))..........((((........)))).))).....)))))).--------- ( -28.02, z-score = -1.24, R) >consensus UUCUUAUUGUAGAAUAACAGUGACGUCGCCAUCGUCGCCACACAUUCAUAAGCUGGCACUGGCGGCCAAAGCCAUACCGGCCAACAAACCGGACACAAAACCUGCAGC_________ ((((......)))).....(((..(((((((..((.((((.............)))))))))))))..........((((........)))).)))..................... (-25.71 = -25.57 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:51 2011