| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,882,823 – 11,882,915 |
| Length | 92 |
| Max. P | 0.848432 |
| Location | 11,882,823 – 11,882,915 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 92.03 |
| Shannon entropy | 0.10980 |
| G+C content | 0.36957 |
| Mean single sequence MFE | -15.99 |
| Consensus MFE | -12.77 |
| Energy contribution | -12.55 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11882823 92 - 27905053 UACUAACCACUACCGCAUCUUUUGAAAGUACAAAACAAUUGCACAAACGGUAGAAGACAAUUAACCGAAAGGAAACGAACCUACCUUGUCUU .........((((((..((....))..((.(((.....))).))...))))))(((((((....((....))....(.......)))))))) ( -17.00, z-score = -2.80, R) >droSec1.super_0 11044078 92 + 21120651 UACUAACCACUACCGCAUCUUUUAAAAAUACAUAACAAUUGGACAAUCGGUAGAAGACAUUUAACCGAAAGGAAUGGAACGCACCUUGUCUU .........((((((.((..(((((.............)))))..))))))))((((((.....((....))...((......)).)))))) ( -17.82, z-score = -2.55, R) >droSim1.chr3R 17923944 92 + 27517382 UACUAACCACUACCGCAUCUUUUAAAAAUACAUAACAAUUGCACAAUCGGUAGAAGACAUUUAACCGAAAGGAAUCGAACGCACUUUGUCUU .........((((((................................))))))((((((.....((....))....(....)....)))))) ( -13.15, z-score = -1.66, R) >consensus UACUAACCACUACCGCAUCUUUUAAAAAUACAUAACAAUUGCACAAUCGGUAGAAGACAUUUAACCGAAAGGAAUCGAACGCACCUUGUCUU .........((((((................................))))))((((((.....((....))....(....)....)))))) (-12.77 = -12.55 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:49 2011