| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,600,921 – 7,601,012 |
| Length | 91 |
| Max. P | 0.987025 |
| Location | 7,600,921 – 7,601,012 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.19 |
| Shannon entropy | 0.42600 |
| G+C content | 0.34968 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.26 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.987025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7600921 91 + 23011544 AGAAUUCAUCAAGAUACAUACAUUUGGCAUAAAUUUGUCACACUAAGGAAAUGGCCUCUUCCAGCGAA--AGACUUAGAGUAUCUAUCUAUAG ...........(((((.((((...(((((......)))))..(((((....(((......))).(...--.).))))).)))).))))).... ( -18.90, z-score = -1.99, R) >droSim1.chr2L 7396618 89 + 22036055 AGACUUCAACAAGAUACAU----UUGGCAUAAAUUUGCCACAUUAAGGAAAUGGCUUUUUUCAGCGAAAAAGACUUAGAGUAUCUUUCUAUAG ..........(((((((..----.(((((......)))))..(((((.......(((((((....))))))).))))).)))))))....... ( -17.90, z-score = -2.10, R) >droSec1.super_3 3114471 89 + 7220098 AGACUUCAUCAAGAUACAU----UUGGCAUAAAUUUGCCACAUUUAGGAAAUGGCUUUUUCCAGCGAAAAAGACUUAUAGUAUCUAUCUAUAG ...........((((((..----.(((((......)))))......(((((......))))).................))))))........ ( -18.80, z-score = -2.47, R) >droYak2.chr2L 17029694 86 - 22324452 AGACUUUAUCAAGAUACCU---UUCGGCACACAUCUGUCGCAUUAAGGAAAUG--UGUUUCCGCCGAA--AGUCUAAAAAUAUUUUUAUAGAC .................((---((((((((((((...((........)).)))--)))....))))))--))((((.(((....))).)))). ( -18.90, z-score = -2.35, R) >droEre2.scaffold_4929 16520187 78 + 26641161 -------AUCUAGAUACCU---UUUGGCACUCAUUUGUCACUUUAUGGCAAUG--CCUUUCCAGCGAA--AGACU-AGAAUAUCUUUCUACAC -------.(((((......---...((((.....((((((.....))))))))--)).......(...--.).))-))).............. ( -15.00, z-score = -1.99, R) >consensus AGACUUCAUCAAGAUACAU___UUUGGCAUAAAUUUGUCACAUUAAGGAAAUGGCUUUUUCCAGCGAA__AGACUUAGAGUAUCUUUCUAUAG ...........((((((.......(((((......)))))......(((((......))))).................))))))........ (-12.34 = -12.26 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:58 2011