| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,864,258 – 11,864,381 |
| Length | 123 |
| Max. P | 0.546621 |
| Location | 11,864,258 – 11,864,381 |
|---|---|
| Length | 123 |
| Sequences | 10 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 67.91 |
| Shannon entropy | 0.68846 |
| G+C content | 0.48655 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.04 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11864258 123 + 27905053 -ACAUUAUUUUUAACAUAAAGCUUAUAUAUGUUUGUCCUUUAUUCUUUCAGUCCACAUCGGAUCAGCAGUCGACUCGCGACUAUCCCCACUUCAGCGGCGACUAUCAGAACGUGACGCUGUCGG -..............((((((..((........))..)))))).......((((.....))))(((((((((.(.(((................))))))))).(((.....))).)))).... ( -19.59, z-score = 0.93, R) >droPer1.super_6 4598860 99 - 6141320 -------------------------UAUCUUCUUCCGCUGACUCUUUCCAGUCCACAUCGGAUCAGCAGUCGACACGCGACUAUCCGCAGUUCAGCGGCGAACAUCAGAACGUACCGCCGCAGG -------------------------.........((((.((((......))))......((((....(((((.....)))))))))))......((((((.((........))..)))))).)) ( -26.10, z-score = -1.05, R) >dp4.chr2 4581401 99 - 30794189 -------------------------UAUCUUCUUCCGCUGACUCUUUCCAGUCCACAUCGGAUCAGCAGUCGACACGCGACUAUCCGCAGUUCAGCGGCGAACAUCAGAACGUACCGCCGCAGG -------------------------.........((((.((((......))))......((((....(((((.....)))))))))))......((((((.((........))..)))))).)) ( -26.10, z-score = -1.05, R) >droGri2.scaffold_14906 13437968 124 - 14172833 ACGAUAAUUUUGAACUAAUUUAUGUGAUAUUCUUUCUUGUCAUCUUUGCAGUCCACAUCGGAUCAGCAGUCGACGCGUGAUUAUCCACAGUUCAGCGGCGACUAUCACAACGUACAGUUGCAGG .........(((((((......(((((((.................(((.((((.....))))..)))((((.(((.(((...........)))))).)))))))))))......)))).))). ( -26.90, z-score = -0.16, R) >droMoj3.scaffold_6540 13065330 122 - 34148556 -AUGUUACUUUGAUCUAAUUAGUUGUCUUUUGUGGUCAUCU-CUUUUGCAGUCGACCUCGGAUCAACAGUCAACGCCUGACUAUCCGCAGUUGAGCGGCGACUACCACAACGUGCAGCUGCAGG -..................(((((((.(.(((((((..((.-((...((..(((((..(((((....(((((.....))))))))))..))))))))).))..))))))).).))))))).... ( -33.60, z-score = -0.76, R) >droVir3.scaffold_13047 15133608 120 - 19223366 ----UUAUUUUUGUCUAAUAUGUUGCAUUUUCUUGUCAUCUGUUUUUGCAGUCGACCUCGGAUCAGCAGUCAACGCGUGACUAUCCGCAGUUGAGCGGCGACUACCACAACGUGCAGCUACAGG ----.................(((((((....((((.....(((.((((..(((((..(((((....(((((.....))))))))))..))))))))).)))....)))).)))))))...... ( -29.00, z-score = 0.09, R) >droSec1.super_0 11025725 123 - 21120651 -ACAUUAUUUUGAACAUAAAGUUUAUAUAUGUUUGUCCUUUAUGCUUUCAGUCCACAUCGGAUCAGCAGUCGACUCGCGACUAUCCCCACUUCAGCGGCGACUAUCAGAACGUGACGCUGUCGG -.........(((((((((((..((........))..)))))))..))))((((.....))))(((((((((.(.(((................))))))))).(((.....))).)))).... ( -25.39, z-score = -0.05, R) >droYak2.chr3R 14261351 123 - 28832112 -ACAUUAUUCCUAACAUGAAGUUGAUAUAUAUUUGUCCUUUCUGCUUUCAGUCCACCUCGGAUCAGCAGUCGACACGCGACUAUCCUCACUUCAGCGGCGAUUAUCAGAACGUGACGCUGCCGG -........((.....((((((.((((......((((....(((((....((((.....)))).)))))..))))......))))...))))))((((((.((((......)))))))))).)) ( -30.80, z-score = -1.60, R) >droEre2.scaffold_4770 11386472 123 + 17746568 -ACAUUUGUCCUAACACAAAGCUGAUACAUCUUUGUCCUCUCUUCUUUCAGUCCACAUCGGAUCAGCAGUCGACACGCGACUAUCCUCACUUCAGCGGCGACUAUCAGAACGUGUCGCUGCCGG -...(((((......)))))(((((.(((....)))...............(((.....))))))))(((((.....)))))............((((((((...........))))))))... ( -29.60, z-score = -1.35, R) >droAna3.scaffold_13250 272234 95 + 3535662 -----------------------------AAUAAAAUAUACUUUUUUUCAGUCCACCUCCGACCAGCUAUCGACACGUGACUAUCCGCACUUUAGCGGCGACCACCACAACGGCCCACUGUCAG -----------------------------.....................(((.......)))........((((.(((.....((((......))))......((.....))..))))))).. ( -14.50, z-score = -0.89, R) >consensus _A_AUUAUUUUUAACA_AAAG_UUAUAUAUUUUUGUCCUUUCUUUUUUCAGUCCACAUCGGAUCAGCAGUCGACACGCGACUAUCCGCACUUCAGCGGCGACUAUCAGAACGUGCCGCUGCAGG ...........................................................((((....(((((.....)))))))))........(((((.................)))))... (-12.38 = -12.04 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:48 2011