Locus 10168

Sequence ID	dm3.chr3R
Location	11,862,274 – 11,862,367
Length	93
Max. P	0.935464

overview

Window 2

Location	11,862,274 – 11,862,367
Length	93
Sequences	12
Columns	112
Reading direction	forward
Mean pairwise identity	70.44
Shannon entropy	0.57224
G+C content	0.53514
Mean single sequence MFE	-29.32
Consensus MFE	-15.10
Energy contribution	-14.67
Covariance contribution	-0.43
Combinations/Pair	1.10
Mean z-score	-1.51
Structure conservation index	0.52
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.40
SVM RNA-class probability	0.935464
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 11862274 93 + 27905053
------------CUUUGACUCCAUCGCCAUCGCAUCUCUCACUC------GGCGCUC-CUUUGAUCGAGUGAUCUUCUGAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
------------..((((((....(((....((((........(------(.(((((-((((((((....)))).....))))))))).)).....))))..))).)))))) ( -27.32, z-score =  -0.58, R)
>droEre2.scaffold_4770 11384435 93 + 17746568
------------CUUUGACUCCAUCGCCAUCGCAUCUCUCGCUC------GGCGCUC-CUUUGAUCGAGUGAUCUUCUGAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
------------..((((((....(((....((((........(------(.(((((-((((((((....)))).....))))))))).)).....))))..))).)))))) ( -27.32, z-score =  -0.12, R)
>droYak2.chr3R 14259342 111 - 28832112
CUUUGAAUCCAUCGGCAUCGCCAUCGCCAUCGCAUCUCUCACUCUCACUCGGCGCUC-CUUUGAUCGAGUGAUCUUCUGAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
..((((..((((((((((......((...((((.(((((((...((((((((((...-...)).)))))))).....)).))))))))))).....)))).)).)))))))) ( -31.00, z-score =  -0.15, R)
>droSec1.super_0 11023818 93 - 21120651
------------CUUUGACUCCAUCGCCAUCGCAUCUCUCACUC------GGCGCUC-CUUUGAUCGAGUGAUCUUCUGAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
------------..((((((....(((....((((........(------(.(((((-((((((((....)))).....))))))))).)).....))))..))).)))))) ( -27.32, z-score =  -0.58, R)
>droSim1.chr3R 17903027 93 - 27517382
------------CUUUGACUCCAUCGCCAUCGCAUCUCUCACUC------GGCGCUC-CUUUGAUCGAGUGAUCUUCUGAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
------------..((((((....(((....((((........(------(.(((((-((((((((....)))).....))))))))).)).....))))..))).)))))) ( -27.32, z-score =  -0.58, R)
>droWil1.scaffold_181130 8649941 76 - 16660200
------------------------------------CUUUGUCCGCAUAUGGCGCUCCCUUUGAUCGAGUGAUCUUCUAAAGGGAGCGACAUUAUUAUGAACGCGUGGUCAA
------------------------------------..(((.((((......(((((((((((...((....))...))))))))))).(((....))).....)))).))) ( -27.80, z-score =  -3.39, R)
>droAna3.scaffold_13250 270532 94 + 3535662
------------------CUUUGGGCCAUCUCUCACUCGCUCCGGCGGCCGGCGCUCUCUUUGAUCGAGUGAUCUUCUAAGGGGAGCGACAUCAUUAUGCACGCGUGGUCAC
------------------.....(((((.........(((.((((...))))(((((((((((...((....))...)))))))))))..............)))))))).. ( -28.80, z-score =  -0.06, R)
>droMoj3.scaffold_6540 13063354 83 - 34148556
-----------------------------CCUCGAGUAUCGGCAAUGGACGGCGCUCUCUUUGAUCGACUGAUCUUCUAAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
-----------------------------....((.((((((((...((((.((((((((((((((....))))....)))))))))).))))....))).)).))).)).. ( -31.70, z-score =  -2.78, R)
>droGri2.scaffold_14906 13435816 83 - 14172833
-----------------------------CUCCAUGCUCCGGCCAUGGCCGGCGCUCUCUUUGAUCGACUGAUCUUCUAAAGGGAGCGACAACAUUAUGCACGCGUGGUCAA
-----------------------------..((((((.(((((....)))))((((((((((((((....))))....))))))))))..............)))))).... ( -35.80, z-score =  -4.36, R)
>droVir3.scaffold_13047 15131289 83 - 19223366
-----------------------------CUUCGUGCUCUGGCAACGGCCGGCGCUCUCUUUGAUCGACUGAUCUUCUAAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
-----------------------------...(((((.(((((....)))))((((((((((((((....))))....))))))))))..........)))))......... ( -30.10, z-score =  -2.12, R)
>droPer1.super_6 4596872 89 - 6141320
------------------CUUUG----AUCU-UCGCGCUCUCUUGUGCUCGGCGCUCUCUUUGAUCGAAUGAUCUUCUAAGGGGAGCGACAUCAUUAUGCACGCGUGGUCAA
------------------..(((----(((.-.((((..(....(((.....((((((((((((((....))))....))))))))))....)))...)..)))).)))))) ( -28.50, z-score =  -1.89, R)
>dp4.chr2 4579412 89 - 30794189
------------------CUUUG----AUCU-UCGCGCUCUCUUGUGCUCGGCGCUCUCUUUGAUCGAGUGAUCUUCUAAGGGGAGCGACAUCAUUAUGCACGCGUGGUCAA
------------------..(((----(((.-.((((..(....(((.....(((((((((((...((....))...)))))))))))....)))...)..)))).)))))) ( -28.90, z-score =  -1.48, R)
>consensus
__________________CUCCA____CACCGCAUCUCUCGCUC__G__CGGCGCUCUCUUUGAUCGAGUGAUCUUCUAAAGGGAGCGACGUCAUUAUGCACGCGUGGUCAA
..................................................(.(((((.((((((((....))))....)))).))))).)...((((((....))))))... (-15.10 = -14.67 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:47 2011