| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,846,821 – 11,846,915 |
| Length | 94 |
| Max. P | 0.594205 |
| Location | 11,846,821 – 11,846,915 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.60 |
| Shannon entropy | 0.42669 |
| G+C content | 0.61570 |
| Mean single sequence MFE | -42.28 |
| Consensus MFE | -22.06 |
| Energy contribution | -21.95 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11846821 94 - 27905053 GGCGCCUAUGG------ACCCGGCUCGAU---GUUUUCGGGGCCAGCUCGAGAUCCAGUUGAGUACC----GAGGCGGGUUCAAGAGGCCGCCGUGCUAGGUGGUCA (((((((.(((------(((((.(((((.---....))((..((((((.(....).))))).)..))----))).))))))))..))))((((......))))))). ( -44.60, z-score = -2.21, R) >droSim1.chr3R 17887691 94 + 27517382 GGCGCCUAUGG------ACCCGGCUCGUU---GUUUUCGGGGCCAGAUCGAGAUCCAGUUGAGUACC----GAGGCGGGUUCAAGAGGCCGCCGUGCUAGGUGGUCA (((((((.(((------(((((.((((.(---((((...((..(.......)..))....))))).)----))).))))))))..))))((((......))))))). ( -39.70, z-score = -1.21, R) >droSec1.super_0 11008476 94 + 21120651 GGCGCCUAUGG------ACCCGGCUCGGU---GUUUUCGGGGCCAGAUCGAGAUCCAGUUGAGUACC----GAGGCGGGUUCAAGAGGCCGCCGUGCUAGGUGGUCA (((((((.(((------(((((.((((((---((((...((..(.......)..))....)))))))----))).))))))))..))))((((......))))))). ( -46.30, z-score = -2.85, R) >droYak2.chr3R 14243297 97 + 28832112 GGCGCCUAUGG------UCCCGGCUGGCUCAGGGUUUUCGGGCCAGCUCGAGAUCCAGUCCAGUUCC----GAGGCGGGUUCAAGAGGCCGCCGUGCUUGGUGGUCA ..(((((.(((------....((((((((..((((((.((((....)))))))))))).))))))))----)))))).........((((((((....)))))))). ( -42.50, z-score = -0.59, R) >droEre2.scaffold_4770 11368845 99 - 17746568 GGCGCCUAUGGC----UCUCUGGCUGGCUCAGGGUUUUCGGGCCAGUUUGAGAUCCAGUUCAGUACC----GAGGCGGGUUCAAGAGGCCGCCGUGCUAGGUGGUCA (((((((.(((.----((((..((((((((.........))))))))..)))).)))....(((((.----..(((((.((....)).)))))))))))))).))). ( -45.40, z-score = -2.13, R) >droAna3.scaffold_13250 254125 107 - 3535662 GGCGCCUCGAACCCGGUUCGGAGUUUUUUUUUGUUUUUAAAAUAAAGUACGAGUUCGGUCGGAUUCCAGAGGGCGCGGGUUCAAGAGGCCGUCCUACUAGGUGGUCA (((((((((((((((((((((((((...(((((((.....)))))))..(((......)))))))))...)))).)))))))..)))))((.((.....))))))). ( -35.20, z-score = -0.93, R) >consensus GGCGCCUAUGG______ACCCGGCUCGCU___GUUUUCGGGGCCAGAUCGAGAUCCAGUUGAGUACC____GAGGCGGGUUCAAGAGGCCGCCGUGCUAGGUGGUCA ..(((((..((........))(((((.............)))))............................))))).........(((((((......))))))). (-22.06 = -21.95 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:45 2011