| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,844,408 – 11,844,507 |
| Length | 99 |
| Max. P | 0.630499 |
| Location | 11,844,408 – 11,844,507 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.31 |
| Shannon entropy | 0.46713 |
| G+C content | 0.49318 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -11.31 |
| Energy contribution | -12.07 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11844408 99 + 27905053 CAACACUGAACUGACCCCCAGCGUAAUCACGCGCACUGGUCUGCCAGAGCGAUCAUCGAAUAACUAAGCU--AGCUUUGACUUAUGGCUUAAGCUACGCAC ....................(((((......(((.((((....)))).))).............((((((--(...........)))))))...))))).. ( -23.50, z-score = -0.99, R) >droSim1.chr3R 17885277 92 - 27517382 CAACACCGAACUGACCCCCAGCGUAAUUACGCGCACUGGUCUGCCAGAGCGGUCAUCGAAUAACUAAGCU--AGCUUUGAC-------UUAAGCUACGCAC ......(((..(((((....((((....))))((.((((....)))).)))))))))).........(((--(((((....-------..)))))).)).. ( -31.60, z-score = -4.26, R) >droSec1.super_0 11006064 92 - 21120651 CAACACCGAACUGACCCCCAGCGUAAUUACGCGCACUGGUCUGCCAGAGCGAUCAUCGAAUAACUAAGCU--AGCUUUGAC-------UUAAGCUACGCAC ......(((..(((......((((....))))((.((((....)))).))..)))))).........(((--(((((....-------..)))))).)).. ( -25.30, z-score = -3.01, R) >droEre2.scaffold_4770 11366303 91 + 17746568 CAACAACGAACUGACCCCAAGCGUAAUCACGCGCACUGGUCUGCCAGAGAGAUCAUCGAAUAACUAAGCU--AGCCUUGAC--------UUAACUACGCAC ......(((..(((.(.(..((((......)))).((((....)))).).).)))))).........(((--((.......--------....))).)).. ( -15.30, z-score = -0.20, R) >droAna3.scaffold_13250 251569 97 + 3535662 CAACAGCGAGCUCACUCCCAGUGUAAUCACACGAACUGGUCUUCCCGAGCGGUCAUCGAAUAACUAAGCU--AGCCCCGAAGAAGAAUGCAAACUUAAC-- .....((.((((........(((....))).(((((((.((.....)).))))..)))........))))--.))........................-- ( -15.80, z-score = 0.58, R) >droWil1.scaffold_181130 8630984 81 - 16660200 CAAUAGCGAACUUACACCCAGCGUCAUAACUCGCACUGGAUUGCCGGAACGUUCAUCGAAUAAUUAAGUCGAAACUUCUAA-------------------- .......((((.........(((........))).((((....))))...)))).((((.........)))).........-------------------- ( -13.80, z-score = -0.50, R) >consensus CAACACCGAACUGACCCCCAGCGUAAUCACGCGCACUGGUCUGCCAGAGCGAUCAUCGAAUAACUAAGCU__AGCUUUGAC_______UUAAGCUACGCAC ......(((...........((((....))))((.((((....)))).)).....))).....(.((((....)))).)...................... (-11.31 = -12.07 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:44 2011