| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,835,677 – 11,835,772 |
| Length | 95 |
| Max. P | 0.509067 |
| Location | 11,835,677 – 11,835,772 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 59.63 |
| Shannon entropy | 0.73520 |
| G+C content | 0.46731 |
| Mean single sequence MFE | -26.21 |
| Consensus MFE | -5.68 |
| Energy contribution | -5.72 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11835677 95 + 27905053 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAUUUGCCAGCGGU-UGCAAAGCGCA-GAGUGCAGCCGCCCAA-AA-GGGAGAGCCAUUACGGCACUUCCAUU--------------- ------.(((((...((.....-.))..)))))..((((...(((((-((((.......-...))))))))).)))-).-(((((.(((.....))).)))))...--------------- ( -35.30, z-score = -3.62, R) >droSim1.chr3R 17876442 95 - 27517382 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAUUUGCCAGCGGU-UGCAAGGCGCA-GAGUGCAGCCGCCCAA-AA-GGGAGAGCCAUUACGGCACUUCCAUU--------------- ------.(((((...((.....-.))..)))))..((((...(((((-((((.......-...))))))))).)))-).-(((((.(((.....))).)))))...--------------- ( -35.30, z-score = -3.20, R) >droSec1.super_0 10997308 96 - 21120651 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAUUUGCCAGCGGU-UGCAAGGCGCA-GAGUGCAGCCACCCAA-AAAGGGAGAGCCAUUACGGCACUUCCAUU--------------- ------.(((((...((.....-.))..)))))..((((...(.(((-((((.......-...))))))).).)))-)..(((((.(((.....))).)))))...--------------- ( -29.90, z-score = -1.87, R) >droYak2.chr3R 14231622 95 - 28832112 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAUUUGCCUGCGGU-UGAAAAGCGCA-GAGUGCAGCCGCCCAA-AA-GGGAGAGCCAUUACGGCACUUCCAUU--------------- ------.(((((...((.....-.))..)))))..((((...(((((-((....((...-..)).))))))).)))-).-(((((.(((.....))).)))))...--------------- ( -33.30, z-score = -2.93, R) >droEre2.scaffold_4770 11357418 94 + 17746568 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAUUUGGCUGCGGU-UGGAAAGCGCA-GCGUGCAGCCGCCCAA-A--GGGAGAGCCAUUACGGAACUUCCAUU--------------- ------.(((((...((.....-.))..))))).....(((((((((-((.......))-)).)))))))......-.--(((((..((.....))..)))))...--------------- ( -33.20, z-score = -2.23, R) >droAna3.scaffold_13250 241719 88 + 3535662 UUCCGUCGGGUUAAUAGAAUUU-ACUUGAACCCAAUAUGCCAGGGCC-UGGAAAGCACAAGAAUGCAGCCAUUACU-GG-GGCACAUUCACU----------------------------- ((((...(((((...((.....-.))..))))).....((....)).-.)))).......(((((..(((......-..-))).)))))...----------------------------- ( -21.90, z-score = -0.39, R) >dp4.chr2 4550687 113 - 30794189 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAAAUGCUUUCAAAAUGCAGAAUGCAGGAACGGAACCAGUGGA-AGCCGGGGAAUCAGGGUCAAAAGUAGAGUCGAAGCAGUUCCAUU ------.(((......((.(((-((((..((((.....(((((((...(((.....)))((.......))..))))-))).((....)).))))...))))))).))........)))... ( -26.14, z-score = -0.48, R) >droPer1.super_6 4568055 112 - 6141320 ------CGGGUUAAUAGAAUUU-ACUUGAACCCAAAAUGCUUUCAAA-UGCAGAAUGCAGGAACGGAACCAGUGGA-AGCCGGGGAAUCAGGGUCAAAAGUAGAGUCGAAGCACUUCCAUU ------.(((......((.(((-((((..((((.....(((((((..-(((.....)))((.......))..))))-))).((....)).))))...))))))).))........)))... ( -26.14, z-score = -0.36, R) >droMoj3.scaffold_6540 13032801 74 - 34148556 ------CAGGUUAAUAGAAAUU-GCUUGAACUCAAUUUACUUUCACCAAACCGAACACCG--CCAACCACAAUAGC-AACAACA------------------------------------- ------..(((.((...(((((-(........))))))...)).))).............--..............-.......------------------------------------- ( -5.80, z-score = -0.34, R) >droGri2.scaffold_14906 13402886 90 - 14172833 ------CAGGUUAAUAGAAAUUUACUUGAACUCAAUUUGCUUUCACCAAACCGAAAGCAG--ACGGCACCAGCAACCAACAACACAACCAACAACAUU----------------------- ------..((((.......................(((((((((........))))))))--)..((....)))))).....................----------------------- ( -15.10, z-score = -3.38, R) >consensus ______CGGGUUAAUAGAAUUU_ACUUGAACCCAAUUUGCCUGCGGU_UGCAAAGCGCA_GAGUGCAGCCACCCAA_AA_GGGAGAGCCAUUACGGCACUUCCAUU_______________ .......(((((...((.......))..)))))........................................................................................ ( -5.68 = -5.72 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:44 2011