Locus 10162

Sequence ID dm3.chr3R
Location 11,832,842 – 11,832,936
Length 94
Max. P 0.859307
window13975

overview

Window 5

Location 11,832,842 – 11,832,936
Length 94
Sequences 7
Columns 103
Reading direction forward
Mean pairwise identity 80.55
Shannon entropy 0.37087
G+C content 0.39798
Mean single sequence MFE -27.73
Consensus MFE -12.46
Energy contribution -14.84
Covariance contribution 2.38
Combinations/Pair 1.05
Mean z-score -2.60
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.95
SVM RNA-class probability 0.859307
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 11832842 94 + 27905053
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCAUGAUUUGUUUAGCGUGAAAAUGCUGAAAAGGU---------AGAAAUGCUUAGGCAUAGGUAGACCAUA
...(((..(((((......((((((((((((((........((((((((....))))))))...))---------)))..)).))))))))))))..)))... ( -26.80, z-score =  -2.35, R)
>droSim1.chr3R 17873584 103 - 27517382
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCCUGAUUUGUUUAGCGUGAAAAUGCUGAAAAUUUCCCGAAUCCGGGCCAGCUUAGGCAUAGGUAGACCAUA
...(((..(((((.....(((.....))).(((((((.(((((((((((....)))))))).....((((....)))).))).))))))))))))..)))... ( -35.10, z-score =  -3.50, R)
>droSec1.super_0 10994496 102 - 21120651
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCCUGAUUUGUUUGGCGUGAAAAUGCUCAAAAUUUCCCGA-UUCCGGCCAGCUUAGGCAUAGGUAGACCAUA
...(((..(((((.....(((.....))).(((((((.(((((((((((....)))).)))).....(((.-...))).))).))))))))))))..)))... ( -30.10, z-score =  -1.83, R)
>droYak2.chr3R 14228456 102 - 28832112
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCCCGAUUUGUUUAGCGUGAAAAUGCUGAAAAUUCCCCGA-UUCCGGGCAGCUCAGGUAUAGGUAGACCAUG
...(((..(((((......((..(((...(((((((..(((((((((((....)))))))).......)))-...))))))).)))..)))))))..)))... ( -32.81, z-score =  -2.90, R)
>droEre2.scaffold_4770 11354412 101 + 17746568
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCCUGAUUUGUUUAGCGUGAAAAUGCUGAAAAUAUCCCGA-UUUCGGGCAGCC-AGGUAUAGGUAGACCAUA
...(((..(((((.....(((.....))).((((((.....((((((((....)))))))).....((((.-...))))....)-))))))))))..)))... ( -33.00, z-score =  -3.09, R)
>dp4.chr2 4547392 94 - 30794189
UGCGGUGAACCUAAUUAAAUGUUUGACAUUUGCCUGAUUUAUUUAGCGUGAAAAUGCUGAAAAAAUUCC----CUCUGAUUCUUGGUAUAUAUGUAUA-----
...((....))..............((((.((((.(((((.((((((((....)))))))).)))))..----...........))))...))))...----- ( -18.14, z-score =  -2.26, R)
>droPer1.super_6 4564748 94 - 6141320
UGCGGUGAACCUAAUUAAAUGUUUGACAUUUGCCUGAUUUAUUUAGCGUGAAAAUGCUGAAAAAAUUCC----CUCUGAUUCUUGGUAUAUAUGUAUA-----
...((....))..............((((.((((.(((((.((((((((....)))))))).)))))..----...........))))...))))...----- ( -18.14, z-score =  -2.26, R)
>consensus
UGCGGUGCACCUAAUUAAAUGUUUGACAUCUGCCUGAUUUGUUUAGCGUGAAAAUGCUGAAAAUAUCCCGA_UCCCGGACAGCUUAGGUAUAGGUAGACCAUA
...(((..(((((.....(((.....)))............((((((((....)))))))).............................)))))..)))... (-12.46 = -14.84 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:41 2011