| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,823,453 – 11,823,545 |
| Length | 92 |
| Max. P | 0.741373 |
| Location | 11,823,453 – 11,823,545 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 76.24 |
| Shannon entropy | 0.48228 |
| G+C content | 0.46411 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -14.26 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11823453 92 + 27905053 CAGUUUCGCUUUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUUGCCAUGCAUACACAC--UCAUA ..((...((....(((((((((((...((((.((..(....)...)).))))....))))).))))))....))...))........--..... ( -25.80, z-score = -1.40, R) >droAna3.scaffold_13250 229729 88 + 3535662 CACUUUUCGAUCUGUGGCAGUGAGAAACCAGAAGAAUAUAUCACGA-GCUCACAUGC-CAUAUGGCGCAUACAGACCCCAUACAC----CUAUG ..........((((((((.(((((......((........))....-.)))))..((-(....))))).))))))..........----..... ( -19.60, z-score = -1.69, R) >droEre2.scaffold_4770 11345341 90 + 17746568 CAGUUUCGCUUUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUCGCCAUGCAUACAU----UCAUA ..((...((....(((((((((((...((((.((..(....)...)).))))....))))).))))))....))...))......----..... ( -25.10, z-score = -1.43, R) >droYak2.chr3R 14218926 90 - 28832112 CAGUUUCGCUUUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUCGCCAUGCAUACAU----UCAUA ..((...((....(((((((((((...((((.((..(....)...)).))))....))))).))))))....))...))......----..... ( -25.10, z-score = -1.43, R) >droSec1.super_0 10985229 92 - 21120651 CAGUUUCGCUCUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUCGCCAUGCAUACACAC--UCAUA ..((...((....(((((((((((...((((.((..(....)...)).))))....))))).))))))....))...))........--..... ( -25.10, z-score = -1.07, R) >droSim1.chr3R 17862871 94 - 27517382 CAGUUUCGCUUUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUCGCCAUGCAUACACACACUCAUA ..((...((....(((((((((((...((((.((..(....)...)).))))....))))).))))))....))...))............... ( -25.10, z-score = -1.24, R) >droWil1.scaffold_181108 4693146 70 + 4707319 ------CAGUUUCGUGU---UCAGAAACCAGAAGAAGAUAUCAGACAGCUU-CAAGCUCACAUACUCGUUCUCUGCUAUA-------------- ------..(((((....---...)))))((((.(((((........(((..-...))).......)).))))))).....-------------- ( -10.06, z-score = 0.62, R) >consensus CAGUUUCGCUUUUGUGGCAGUGAGAAACCAGAAGAAGAUAUCACGCUGCUGGCCAGCUCACAUGCCAUUUUCGCCAUGCAUACAC____UCAUA .......((....(((((((((((...((((....((........)).))))....))))).))))))....)).................... (-14.26 = -15.23 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:40 2011