| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,808,500 – 11,808,591 |
| Length | 91 |
| Max. P | 0.778179 |
| Location | 11,808,500 – 11,808,591 |
|---|---|
| Length | 91 |
| Sequences | 13 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 61.89 |
| Shannon entropy | 0.81968 |
| G+C content | 0.43044 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -9.64 |
| Energy contribution | -9.48 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11808500 91 - 27905053 --------UUACGAUUGAAGUUGGAUCAUAAAACAUAAAAGCCCAUUUU----AUGCUUACCAUAGUGGUCAGGAGCAGGACAUCGAUGCUGGGAUCGCUGUU --------....((((.......))))......(((((((.....))))----)))......(((((((((...((((.(....)..))))..))))))))). ( -19.00, z-score = 0.14, R) >droGri2.scaffold_15074 6063496 91 - 7742996 --------AAAACAUUUAACUUGGUUG-CCAAAUGGGGAUCACAAAUUUU---UGGCUUACCAAAGUGGUCAGGAGCAGGACAUCGAUGCUGGGAUCGCUGUU --------............(((((.(-(((((...(.....).....))---))))..)))))(((((((...((((.(....)..))))..)))))))... ( -24.50, z-score = -1.14, R) >droMoj3.scaffold_6540 18985250 91 + 34148556 ---------AAACAUUGGGUUUAAUUAUGUGACUGGCAAAAACGAUGUUG---GGACUUACCAAAGUGGUCAGCAGCAGCACAUCGAUGCUCGGAUCACUGUU ---------...................((((((((((....((((((..---.((((.((....)))))).((....)))))))).))).))).)))).... ( -20.70, z-score = 0.10, R) >droVir3.scaffold_13047 2487608 90 - 19223366 ---------AAACAUUAAGGUU-ACGAUGCGUAUGGUAACCAAUGGAAAU---GAACUUACCAAAGUGGUUAGUAGCAGCACAUCGAUGCUGGGAUCACUGUU ---------...((((..((((-((.((....)).)))))))))).....---...........(((((((..(((((.(.....).))))).)))))))... ( -21.40, z-score = -0.87, R) >droWil1.scaffold_181089 10706547 77 - 12369635 ---------------------UUAUUG-UUAAAGAGAAUUUCCAGGAUA----AUCCUUACCAGAGUGGUUAGUAGCAGAACAUCAAUGCUUGGAUCACUAUU ---------------------......-...............(((...----..)))......(((((((...((((.........))))..)))))))... ( -13.40, z-score = -0.26, R) >droPer1.super_3 3256805 82 - 7375914 ----------------UACUUCCAAUG-GGAGAUG-GGAUAUCAGAUCAG---AGUCUUACCAGCGUGGUCAGGAGCAGCACGUCAAUGCUGGGAUCGCUAUU ----------------.........((-((((((.-.(((.....)))..---.))))).)))..((((((.....(((((......))))).)))))).... ( -20.80, z-score = 0.24, R) >dp4.chr2 20508141 79 - 30794189 ----------------UACUUCCAAUG-GGAGAUG----UAUCAGAUCAG---AGUCUUACCAGCGUGGUCAGGAGCAGCACAUCAAUGCUGGGAUCGCUAUU ----------------..(((((...)-))))...----.....((((..---..(((((((.....))).)))).(((((......))))).))))...... ( -19.70, z-score = -0.03, R) >droAna3.scaffold_13340 16413470 92 - 23697760 --------UUAACAUUAAAAGCGAAUUCAAAUUUUGUGAAAGGCCAUCUC---UUAAAUACCAGCGUGGUUAGGAGAAGCACAUCAAUACUGGGAUCGCUGUU --------...........(((((.((((.......(((...((..((((---((((.(((....))).)))))))).))...)))....)))).)))))... ( -20.80, z-score = -1.43, R) >droEre2.scaffold_4770 11330118 88 - 17746568 --------UAACAAUUAAUGUUCGAUC--AAAACAAAAAGGCC-AUGUU----UUGCUUACCAUAGUGGUCAGGAGCAACACAUCGAUGCUGGGAUCGCUGUU --------...............((.(--((((((........-.))))----))).))...(((((((((...((((.(.....).))))..))))))))). ( -17.80, z-score = -0.04, R) >droYak2.chr3R 14203753 88 + 28832112 --------UUUCGAUUAAAGUUUGAUC--AAAACAUAGAAGCC-CUUCU----UUGCUUACCAUAGUGGUCAGGAGCAAAACAUCGAUACUGGGAUCGCUGUU --------...(((((..((((((((.--........(((...-.)))(----(((((((((.....)))...)))))))..))))).)))..)))))..... ( -18.80, z-score = -0.64, R) >droSec1.super_0 10970445 89 + 21120651 --------UUACGAUUAAAGUUGGAUC--AAAACAUGAAAGCCAAUUUU----AUGCUUACCAUAGUGGUCAGGAGCAGCACAUCGAUGCUAGGAUCGCUGUU --------.......(((((((((.((--(.....)))...))))))))----)........(((((((((...((((.(.....).))))..))))))))). ( -23.80, z-score = -2.11, R) >droSim1.chr3R 17847429 89 + 27517382 --------UUACGAUUAAAGUUUGAUC--AAAACAUAAAAGCCAAUUUU----AUGCUUACCAUAGUGGUCAGGAGCAACACAUCGAUGCUGGGAUCGCUGUU --------....(((((.....)))))--....(((((((.....))))----)))......(((((((((...((((.(.....).))))..))))))))). ( -20.20, z-score = -1.41, R) >anoGam1.chr2R 51853664 103 + 62725911 UGGUUAGUGGGGCUCGAGAGCUCGGUGCUUGUAACGCUGUCGCGGUUUGUGCGGCGCUUACCUGUGUCGUUAGGAGCAGCACAUCGAUGCUAGGAUCGCCGUU .(((.....(((((....)))))(((.((.(((.((.(((.((.((((.((((((((......)))))).)).)))).))))).)).))).)).))))))... ( -36.80, z-score = 0.39, R) >consensus ________UUACCAUUAAAGUUCGAUC__AAAAUAGAAAAGCCAAUUUU____AUGCUUACCAGAGUGGUCAGGAGCAGCACAUCGAUGCUGGGAUCGCUGUU .................................................................((((((...((((.........))))..)))))).... ( -9.64 = -9.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:40 2011