| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,801,528 – 11,801,605 |
| Length | 77 |
| Max. P | 0.792759 |
| Location | 11,801,528 – 11,801,605 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 72.99 |
| Shannon entropy | 0.48929 |
| G+C content | 0.56410 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -15.89 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.37 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.792759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11801528 77 + 27905053 -----------AUCCAAUCCCAA--CCCCCCGCCUCAGUGGGUGGCUUCG-ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC -----------............--((.(((((....))))).))...((-(((((.((((((((........)).)))).))))))))). ( -23.60, z-score = -1.89, R) >droSim1.chr3R 17840168 89 - 27517382 AUCCAAUCCCAAUCCCCAUCCCAA-CCCCCCGCCUCAGUGGGUGGCUUCG-ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC ........................-((.(((((....))))).))...((-(((((.((((((((........)).)))).))))))))). ( -23.60, z-score = -1.86, R) >droYak2.chr3R 14196652 90 - 28832112 AUUCAAUCCCCAUUUAAUCCCCAUCCCCCUCGCCUCGGUGGGUGGCUUCG-ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC ....................((((((.((.......)).))))))...((-(((((.((((((((........)).)))).))))))))). ( -24.60, z-score = -1.44, R) >droEre2.scaffold_4770 11322985 86 + 17746568 AUCCAAUCCCAAUCCCAUUCCC----CCCUCGCCUCGGUGGGUGGCUUCG-ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC ......................----(((((((....))))).))...((-(((((.((((((((........)).)))).))))))))). ( -22.30, z-score = -0.56, R) >droSec1.super_0 10963425 89 - 21120651 AUCCAAUCCCAAUCCCCAUCCCAA-CCCCCCGCCUCAGUGGGUGGCUUCG-ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC ........................-((.(((((....))))).))...((-(((((.((((((((........)).)))).))))))))). ( -23.60, z-score = -1.86, R) >droGri2.scaffold_15074 6053473 72 + 7742996 -----------AUCCGCACCCA----CCCCCUGGCCGUAGGCUGCCCUCACGCAAGGUUGU----ACGUGGAACGUCGUUGUUCUUGUUGC -----------.....(((..(----(..(((.((.(((((....))).)))).)))..))----..)))(((((....)))))....... ( -14.20, z-score = 2.20, R) >consensus AUCCAAUCCCAAUCCCAACCCCA__CCCCCCGCCUCAGUGGGUGGCUUCG_ACAAGGUCGCUGACAAAUCGAAGUACAGCAGAUUUGUCGC .............................((((....))))(((((((......))))))).((((((((...........)))))))).. (-15.89 = -15.45 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:39 2011