Locus 10158

Sequence ID	dm3.chr3R
Location	11,785,235 – 11,785,349
Length	114
Max. P	0.724958

overview

Window 1

Location	11,785,235 – 11,785,349
Length	114
Sequences	12
Columns	120
Reading direction	forward
Mean pairwise identity	89.01
Shannon entropy	0.21662
G+C content	0.29661
Mean single sequence MFE	-20.89
Consensus MFE	-19.18
Energy contribution	-19.03
Covariance contribution	-0.14
Combinations/Pair	1.12
Mean z-score	-1.14
Structure conservation index	0.92
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.51
SVM RNA-class probability	0.724958
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 11785235 114 + 27905053
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>droSim1.chr3R 17823878 114 - 27517382
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>droSec1.super_0 10947043 114 - 21120651
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>droYak2.chr3R 14180374 114 - 28832112
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>droEre2.scaffold_4770 11306836 114 + 17746568
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>droAna3.scaffold_13340 16390135 114 + 23697760
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUACUUUAU---CUUUCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-.........--...................---............ ( -20.90, z-score =  -1.05, R)
>dp4.chr2 20483795 115 + 30794189
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUAACUUAUC--UUUCUUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-..((((((.--............))))))..--............ ( -22.52, z-score =  -1.57, R)
>droPer1.super_3 3232359 115 + 7375914
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU--AUAACUAUCUUUAACUUAUC--UUUCUUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-..((((((.--............))))))..--............ ( -22.52, z-score =  -1.57, R)
>droWil1.scaffold_181089 7270946 120 - 12369635
UAUGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGCCUCUAAGUUUUUAUAACAAUCUAUACUUUAUUCUUUUCUUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))......(((.....)))............................. ( -20.40, z-score =  -0.95, R)
>droVir3.scaffold_13047 2459037 105 + 19223366
UAUGCUGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU-----AUAACUUAACGUUUCU---UUCCAU------
...((..(((((...(((((.((..(((((...((((........))))..))))).)).))))))))))..))-..(((((..-----...)))))........---......------ ( -19.70, z-score =  -0.89, R)
>droMoj3.scaffold_6540 18956948 105 - 34148556
UAUGCCGACUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUUU-----AUAACUUAACGUUUCU---UUCCAU------
...(((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-..(((((..-----...)))))........---......------ ( -24.50, z-score =  -2.50, R)
>droGri2.scaffold_15074 6033713 105 + 7742996
UAUGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGAU-UCUAAGUUU-----AUAACUUAACGUUUCU---UUCCUU------
.....(((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))..-..(((((..-----...)))))........---......------ ( -15.70, z-score =   0.13, R)
>consensus
UACGCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC_UCUAAGUUU__AUAACUAUCUUUACUUUAU___CUUCCUUUCCAU
...(((((((((...(((((.((..(((((...((((........))))..))))).)).)))))))))))))).............................................. (-19.18 = -19.03 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:38 2011