| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,769,660 – 11,769,752 |
| Length | 92 |
| Max. P | 0.794654 |
| Location | 11,769,660 – 11,769,752 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 88.16 |
| Shannon entropy | 0.19339 |
| G+C content | 0.54295 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -18.80 |
| Energy contribution | -20.24 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11769660 92 + 27905053 CUCCCCAACAUUGUCGCUCCACCGACAGCAGCAGCAAAACACCACCCACUACCCGCCACCAUUGGAUGGCCUUGCUUGCAUGCAUUUUGUUA ......((((.(((((......)))))((((((((((....(((.(((..............))).)))..)))).))).)))....)))). ( -21.54, z-score = -1.89, R) >droSim1.chr3R 17808477 91 - 27517382 CUCCCCAACAUUGUCGCUCCACUGACAGCAGCAGCAAAACAACACCCACU-CCCGUCCCCAUUGGGUGCCCUUGCCUGCAUGCAUUUUGUUA ......((((.(((((......)))))((((((((((.....((((((..-...........))))))...))).)))).)))....)))). ( -23.12, z-score = -2.28, R) >droSec1.super_0 10931548 91 - 21120651 CUCCCCAACAUUGUCGCUCCACCGACAGCAGCAGCAAAACAACACCCACU-CCCGCACCCAUUGGGUGGCCUUGCUUGCAUGCAUUUUGUUA ......((((.(((((......)))))((((((((((.....((((((..-...........))))))...)))).))).)))....)))). ( -25.72, z-score = -2.31, R) >droEre2.scaffold_4770 11291498 85 + 17746568 CUCCCCAACAUUGUCGCUCCA---GCAGGAGCAGCAAAACACCACCCACA----UCCCUCACUGGUUGGCCUUGCUUGCAUGCAUUUUGUUA ..........((((.(((((.---...))))).))))(((((((.(((..----........))).)))...(((......)))...)))). ( -20.10, z-score = -0.58, R) >consensus CUCCCCAACAUUGUCGCUCCACCGACAGCAGCAGCAAAACAACACCCACU_CCCGCCCCCAUUGGGUGGCCUUGCUUGCAUGCAUUUUGUUA ......((((.(((((......)))))((((((((((....(((((((..............)))))))..)))).))).)))....)))). (-18.80 = -20.24 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:35 2011