| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,751,827 – 11,751,920 |
| Length | 93 |
| Max. P | 0.988006 |
| Location | 11,751,827 – 11,751,920 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 67.16 |
| Shannon entropy | 0.60012 |
| G+C content | 0.36526 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -10.50 |
| Energy contribution | -9.37 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.988006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11751827 93 - 27905053 CAUCUUUUAUGUCACCAACUUUUGUUUUGAAGCUAGAGAGCUAUAUUAAAUC-----AGGUGGUAUAGAACAAACUCCAGUGUUUGCCUUA-UAUUGCC ..(((((....(((..(((....))).)))....))))).............-----.((..((((((..(((((......)))))..)))-)))..)) ( -19.50, z-score = -1.15, R) >droPer1.super_3 3184589 97 - 7375914 UUGCUCUUCUAUUAAUAUAUAUU-CAUACAAAAGAGUAUGCUCUCAUGGCUCCAAAAAAAUAUUGCUAAACAAACGCAAGUGCUAGUCAGG-CGGUACU .(((((((.(((.(((....)))-.)))...))))))).(((.....)))..........(((((((..((..((....))....))..))-))))).. ( -15.40, z-score = -0.17, R) >dp4.chr2 20437329 97 - 30794189 UUGCUCUUCUGUUAAUAUAUAUU-CAUACAAAAGAGUAUGCUCUCAUGGCUCCAAAAAAAUAUUACUAAACAAACGCAAGUGCGAGUCAGG-CGGUACU .(((((((.(((...........-...))).)))))))((((.((.((((((.....................((....))..))))))))-.)))).. ( -18.24, z-score = -1.23, R) >droEre2.scaffold_4770 11272900 93 - 17746568 CGACUUUUAUGCCACCAACAAUUGCCUUCAAGCUAGAGAGCUUUAUUAAAUC-----AGGUGGUAUACAACAAACGCAACUGUUUGUCCCA-UAUUGCC .......(((((((((....(((......(((((....))))).....))).-----.)))))))))..(((((((....)))))))....-....... ( -19.60, z-score = -1.53, R) >droYak2.chr3R 14146458 94 + 28832112 CGACUUUUAUGCCACCAGCAAUUGUUUUCGAGCUAGAGAGCAAUAUUAAAUC-----AGGUGGCAUACAACAAACAUAACUGUUUGUCUAAUUAUUGCC .......(((((((((....(((((((((......)))))))))........-----.)))))))))..(((((((....)))))))............ ( -26.32, z-score = -3.68, R) >droSec1.super_0 10913685 93 + 21120651 CAACUUUUAUGCCAGCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUC-----AGGUGGUAUAGAACAAACACCAGUGUUUGUCUUA-UAUUGCC .......................((((((......))))))...........-----.((..(((((..(((((((....)))))))..))-)))..)) ( -23.30, z-score = -2.76, R) >droSim1.chr3R 17790604 93 + 27517382 CAACUUUUAUGCCACCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUC-----AGGUGGUAUAGAACAAACUCCAGUGUUUGUCUUA-UAUUGCC .....(((((((((((...(((.((((((......))))))...))).....-----.)))))))))))((((((......))))))....-....... ( -23.60, z-score = -3.09, R) >consensus CAACUUUUAUGCCACCAACAAUUGUUUUCAAACUAGAGAGCUAUAUUAAAUC_____AGGUGGUAUAGAACAAACGCAAGUGUUUGUCUUA_UAUUGCC .......................((((((......)))))).................(((((((((..((((((......))))))..)).))))))) (-10.50 = -9.37 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:34 2011