| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,750,733 – 11,750,832 |
| Length | 99 |
| Max. P | 0.891256 |
| Location | 11,750,733 – 11,750,832 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.46470 |
| G+C content | 0.36750 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -15.49 |
| Energy contribution | -14.67 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11750733 99 - 27905053 GAGAAUGUGCUCGUAUUAUUAAAUAUCUGUAUGGGCGGCAUUUCGGAAUGGGCUAUAUUUUGGCCUAGCCAUGCAUAAAUAGGCAAUCGUUAUAAAGGU ..((((((((((((((............)))))))).))))))(((..(((((((.....)))))))(((((......)).)))..))).......... ( -25.60, z-score = -0.85, R) >droSim1.chr3R 17789525 97 + 27517382 GAGAAUGUGCUCGUAUUAUUAAAUA--UGUAUGGGCGGCAUUUCGGAAUGGGCUAUAUUUUUGCCUAUGCAUGCAUAAAUAGGUGCUCGUUAUAAAGGU ((((.(((((((((((.........--.)))))))).)))))))..(((((((..(((((.(((........))).)))))...)))))))........ ( -25.80, z-score = -1.28, R) >droSec1.super_0 10912594 97 + 21120651 GAGAAUGUGCUCGUAUUAUUAAAUA--UGUAUGGGCGGCAUUUCGGAAUGGGCUAUAUUUUUGCCUAUGCAUGCAUAAAUAGGCACUCGUUAUAAAGGU ((((.(((((((((((.........--.)))))))).)))))))..((((((.........(((((((..........)))))))))))))........ ( -23.10, z-score = -0.43, R) >droYak2.chr3R 14145384 97 + 28832112 GAGAAUGUGCUCGUAUUAUUAAAUA--UGUAUGGGCGGCAUUUUGGAAUGGGCCAUAUUUUUGCCUAUGCAUGUAUAAAUAGGCACUCAUUAUCAAGGU ((....(((((..(.((((...(((--(((((((((((.....(((......))).....)))))))))))))))))))..)))))......))..... ( -27.80, z-score = -1.86, R) >droEre2.scaffold_4770 11271808 97 - 17746568 GAGAAUGUGCUCGUAUUAUUAAAUA--UGCAUGGGCGGCAUUUUGGAAUGGGCCAUAUUUUUGCCUAUGCAUGUUUAAAUAGGCAGUCAUUAUAAAGGU ...((((.((((.((((..((((((--(((((((((((.....(((......))).....))))))))))))))))))))).).)))))))........ ( -31.20, z-score = -2.97, R) >droMoj3.scaffold_6540 18908586 85 + 34148556 GAAUGUGUGAAAUGAAUAUCAAAAAUAUGUUUAUGC-GCAUAUUGAAAAUGGUU-UAUGUAGAUUGAUCUGCAGACGAGACAACAAU------------ .((((((((..((((((((.......)))))))).)-))))))).......(((-(.((((((....))))))....))))......------------ ( -18.50, z-score = -1.97, R) >consensus GAGAAUGUGCUCGUAUUAUUAAAUA__UGUAUGGGCGGCAUUUCGGAAUGGGCUAUAUUUUUGCCUAUGCAUGCAUAAAUAGGCACUCGUUAUAAAGGU ..((((((((((((((............)))))))).))))))...................((((((..........))))))............... (-15.49 = -14.67 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:33 2011