| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,584,833 – 7,584,930 |
| Length | 97 |
| Max. P | 0.850289 |
| Location | 7,584,833 – 7,584,930 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.77 |
| Shannon entropy | 0.46294 |
| G+C content | 0.41722 |
| Mean single sequence MFE | -19.74 |
| Consensus MFE | -12.11 |
| Energy contribution | -12.51 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7584833 97 + 23011544 GCUGCCACAUGAAGCACUUUCAACGCCAAAUAAAGGA--AGGCCAGACAAAUGUGGCAA-CAACUUAAUUUAAACA--UCGAGAAAUUAAGGAA---AUGCACUC-------- ((((((((((...((.(((((.............)))--)))).......)))))))).-...((((((((.....--.....))))))))...---..))....-------- ( -21.72, z-score = -2.46, R) >droAna3.scaffold_12916 15515724 99 + 16180835 GCUGGCACUUGAAGCACUUUCAACGCCAAACAGAAAC--CCGAGAGACAAAUGUGCCAA-CAACUUAAUUUAAAAAAACGUAGAAAUUAAAGAA---CUGCACUC-------- (.((((((........(((((................--..)))))......)))))).-)..................((((...........---))))....-------- ( -13.41, z-score = -0.34, R) >droEre2.scaffold_4929 16503833 98 + 26641161 GCUGCCACAUGAAGCACUUUCAACGCCAAAUAAAGGA--ACGACAGACAAAUGUGGCAAACAACUUAAUUUAAACG--CGGAGAAAUUAAGGAA---AUGCACUC-------- ((((((((((......((.((....((.......)).--..)).))....)))))))).....((((((((.....--.....))))))))...---..))....-------- ( -19.40, z-score = -1.91, R) >droYak2.chr2L 17012929 99 - 22324452 GCUGCCACAUGAGGCACUUUCAACGCCAAGUAAAGGACAACGCUAGACAAAUGUGGCAA-CAACUUAAUUUAAACA--CGAAGAAAUUAAGGAA---AUGCACUC-------- ((((((((((..(((.........)))..((..((.......))..))..)))))))).-...((((((((.....--.....))))))))...---..))....-------- ( -22.00, z-score = -2.40, R) >droSec1.super_3 3098380 97 + 7220098 GCUGCCACAUGAAGCACUUUCAACGCCAAAUAGAGGA--AGGCCAGACAAAUGUGGCAA-CAACUUAAUUUAAACA--UCGACAAAUUAAGGAA---AUGCACUC-------- ((((((((((...((.(((((.............)))--)))).......)))))))).-...((((((((.....--.....))))))))...---..))....-------- ( -21.42, z-score = -2.34, R) >droSim1.chr2L 7380565 97 + 22036055 GCUGCCACAUGAAGCACUUUCAACGCCAAAUAGAGGA--AGGCCAGACAAAUGUGGCAA-CAACUUAAUUUAAACA--UCGAGAAAUUAAGGAA---AUGCACUC-------- ((((((((((...((.(((((.............)))--)))).......)))))))).-...((((((((.....--.....))))))))...---..))....-------- ( -21.72, z-score = -2.24, R) >droVir3.scaffold_12963 11046742 111 + 20206255 GCUGGCACUUGGCACCUUUCGAGCAGCACGCAGGAUAACAACAGCGUCAGGAGCAGGACUUAAUUUGAACGAAAUG--CAAACAGAACAAGAACUACACGCACUUGAAUAGCU ((((...(((((......)))))))))...............(((.(((((.((((..(((..((((.........--....))))..)))..))....)).)))))...))) ( -18.52, z-score = 1.41, R) >consensus GCUGCCACAUGAAGCACUUUCAACGCCAAAUAGAGGA__ACGCCAGACAAAUGUGGCAA_CAACUUAAUUUAAACA__CCGAGAAAUUAAGGAA___AUGCACUC________ ((((((((((...............((.......))..............)))))))).....((((((((............))))))))........))............ (-12.11 = -12.51 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:57 2011