| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,701,450 – 11,701,558 |
| Length | 108 |
| Max. P | 0.651498 |
| Location | 11,701,450 – 11,701,558 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.53 |
| Shannon entropy | 0.46557 |
| G+C content | 0.59022 |
| Mean single sequence MFE | -43.73 |
| Consensus MFE | -18.80 |
| Energy contribution | -21.55 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11701450 108 - 27905053 UGCGUUCAACUUGAGCGGCGGAAUCGCCGACGACCGCCUGCCUGCGAAUCCGAUUUGGAUUCGGAUUCGGAUGCGGGCGUUCAGUUCGGUUUGGCGAGUCGAGCGUGU .((((((.(((((.((((((....))))).)((.(((((((.(.(((((((((.......))))))))).).))))))).))............))))).)))))).. ( -53.70, z-score = -3.24, R) >droSim1.chr3R 17744748 94 + 27517382 ----------UUGAGCGGCGGAAUCGACGACGACC----GCCUUCGAAUCCGAUUUGGAUUCGGAUUCGGAUGCGGGCGUUCAGUUCGGUUUGGCGAGUCGAGCGUGU ----------((((.(.((.(((((((.((((.((----((.(((((((((((.......))))))))))).)))).))))....))))))).))..)))))...... ( -41.40, z-score = -1.84, R) >droSec1.super_0 10866701 94 + 21120651 ----------UUGAGCGGCGGAAUCGGCGACGACC----GCCUUCGAAUCCGAUUUGGAUUCGGAUUCGGAUGCGGGCGUUCAGUUCGGUUUGGCGUGUCGAGCGUGU ----------.((((((......(((....)))((----((.(((((((((((.......))))))))))).)))).))))))((((((.........)))))).... ( -41.20, z-score = -1.56, R) >droYak2.chr3R 14096262 108 + 28832112 UGCGUCCGACUUCAGCGGCGGAAUCGCCGACGACCGACCGCCUGCGAAUCCGACUUGGAUUCGGAUUCGGAUGCGGACGUUCAGUUCGGUUUGGCGAGUCGAGCGUGU .(((..((((((..((((((....))))...((((((((((.(.(((((((((.......))))))))).).))))((.....))))))))..))))))))..))).. ( -49.70, z-score = -1.73, R) >droEre2.scaffold_4770 11226509 98 - 17746568 UGCGUCCGACUUCAGCGGCGGAAUCGCCGA----CGAGCGCCUGCGAAUCCGAUUUGGAUU------CGGAUGCGGGCGUUCAGUUCGGUUUGGCGAGUCGAGCGUGU .(((..((((((.....((.((((((..((----(((((((((((..((((((.......)------))))))))))))))).))))))))).))))))))..))).. ( -48.90, z-score = -2.64, R) >droWil1.scaffold_181089 7210122 95 + 12369635 UGCGGUCGUUGUAGACGUCGUGAUCGUCAUCG-------GAGUCCGAAUCCCAGUCCAA----AAUGUAGAU-CGUUCGAUCAGUUCGGUUU-UCGACUCGAGCGUGU .(((.(((.....((((.......)))).(((-------(((.((((((..((......----..))..(((-(....)))).)))))).))-))))..))).))).. ( -27.50, z-score = -0.50, R) >consensus UGCGU_CGACUUGAGCGGCGGAAUCGCCGACGACC____GCCUGCGAAUCCGAUUUGGAUUCGGAUUCGGAUGCGGGCGUUCAGUUCGGUUUGGCGAGUCGAGCGUGU ...............((.((....)).))..........((.(.(((((((((.......))))))))).).))..((((((..((((......))))..)))))).. (-18.80 = -21.55 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:26 2011