| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,690,652 – 11,690,738 |
| Length | 86 |
| Max. P | 0.943325 |
| Location | 11,690,652 – 11,690,738 |
|---|---|
| Length | 86 |
| Sequences | 6 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 64.53 |
| Shannon entropy | 0.66731 |
| G+C content | 0.40308 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -8.59 |
| Energy contribution | -8.28 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11690652 86 + 27905053 UGUGUAGUGAAAAUAAA-GAUAUAUUAAGUCAGUGUCUACAGUGGUCGCUCGAGAGGGUGAACUAAAGACAACAAAGAUAGCCAACU ..(((............-(((.......)))..(((((....(((((((((....))))).)))).))))))))............. ( -16.70, z-score = -0.84, R) >droSim1.chr3R 17734210 73 - 27517382 UGCGUAGUGAAAACAAA-GAUAUAUUAAGUCAGUGUCUACAGUAGUCACUCGAGGGGGUGAACUAAAGACAACA------------- ......((....))...-(((.......)))..(((((....(((((((((....))))).)))).)))))...------------- ( -15.50, z-score = -1.25, R) >droSec1.super_0 10856201 86 - 21120651 UGCGUAGUGAAAACAAA-GAUAUAUUAAGUCAGUGUCUACAGUGGUCGCUCGAGAGGGUGAACUAGGGGUAGCAAAGAUAUGCAACU (((((.((....))...-..........(((..((.((((..(((((((((....))))).))))...))))))..))))))))... ( -24.70, z-score = -3.08, R) >droYak2.chr3R 14085362 77 - 28832112 UGCGAGGUGAAAAUAAA-GAUAUAUUAAGUCUGUGUCUACAGUAGUCGCUCGAGAGGGUGAACAACAGAUGUCAAAUU--------- ...((.((........(-((((((.......)))))))...((..((((((....))))))...))..)).)).....--------- ( -16.40, z-score = -1.25, R) >droEre2.scaffold_4770 11215385 84 + 17746568 UGCAAGGUGGAAAUAAA-GAUAUAUUAAAUCUGUGU--ACAGUUGUCGCUCGGGAGGGUGAACAACGGAUAUCAAAAACUUUAAAUU ...(((((.((.(((.(-(((.......)))).)))--...((((((((((....))))).))))).....))....)))))..... ( -17.80, z-score = -2.23, R) >anoGam1.chr2R 35112549 76 + 62725911 CAUGCUGUGGGUGUGUACGGUACACGGUGGUAGUGUCGCCGAUUGGAAGUUGCAAAAAUGAACGAGAUAUAAAACA----------- ......((...(((((.((((((((.......)))).)))).(((...(((.....)))...))).)))))..)).----------- ( -13.90, z-score = 1.11, R) >consensus UGCGUAGUGAAAAUAAA_GAUAUAUUAAGUCAGUGUCUACAGUAGUCGCUCGAGAGGGUGAACUAAAGAUAACAAA_A_________ .................................(((((....(((((((((....))))).)))).)))))................ ( -8.59 = -8.28 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:25 2011