| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,619,121 – 11,619,217 |
| Length | 96 |
| Max. P | 0.888413 |
| Location | 11,619,121 – 11,619,217 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.02 |
| Shannon entropy | 0.48805 |
| G+C content | 0.36532 |
| Mean single sequence MFE | -20.52 |
| Consensus MFE | -11.12 |
| Energy contribution | -12.64 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11619121 96 - 27905053 ACUGGGUUCAGUUUUGCGAAACGUAAUAUUUCUUAUGUUCAUACUAUCGAAUGUUAUCGACUCAGUCGAUAGCAAUGCAGAUAUGCCUGCUUACGC ...((((.....((((((((.(((((......))))))))...........((((((((((...))))))))))..)))))...))))........ ( -25.00, z-score = -1.85, R) >droSim1.chr3R_random 641583 96 - 1307089 ACUGGGUUAAUUUUUGCGAAACGUAAUAUUUCUUAUGUUAAUAAUAUCAAAUGUUAUCGAGUCAGUCGAUAGCGAUCCAGAUAAGGCAGCUUACGC .(((((((...........(((((((......))))))).............((((((((.....))))))))))))))).((((....))))... ( -22.10, z-score = -1.64, R) >droSec1.super_0 10785506 96 + 21120651 ACUGGGUUAAUUUUUGCGAAACGUAAUAUUUCUUAUGUUAAUAAUAUCAAAUGUUAUCGAGUCAGUCGAUAGCGAUGCAGAUAUGGCAGCUUACGC ..((((((.((.((((((.(((((((......)))))))............(((((((((.....))))))))).)))))).))...))))))... ( -21.00, z-score = -0.76, R) >droYak2.chr3R 14013499 78 + 28832112 GCUAAGCCAAAUUUUGCGAAAC-----AUUUCCUAUUUCAAAACUAUCGACUGUUAUCGAGUCAGUCGAUAGCAAUGCAGACC------------- ............(((((((((.-----........))))....((((((((((.........))))))))))....)))))..------------- ( -18.70, z-score = -3.06, R) >droEre2.scaffold_4770 11140714 80 - 17746568 ---AUGCUAAAUUUUGCGAGACGUAAAAUUUCUAAUUUCAACACUAUCGAGUAUUAUCGAGCUAGUCGAUAAUUAUGAAGCUC------------- ---..(((((((((((((...))))))))))...............(((...((((((((.....))))))))..))))))..------------- ( -15.80, z-score = -1.17, R) >consensus ACUGGGUUAAAUUUUGCGAAACGUAAUAUUUCUUAUGUUAAUACUAUCGAAUGUUAUCGAGUCAGUCGAUAGCAAUGCAGAUA_G_C_GCUUACGC ............((((((.(((((((......)))))))............(((((((((.....))))))))).))))))............... (-11.12 = -12.64 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:20 2011