| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,551,194 – 11,551,288 |
| Length | 94 |
| Max. P | 0.903199 |
| Location | 11,551,194 – 11,551,288 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Shannon entropy | 0.17977 |
| G+C content | 0.54557 |
| Mean single sequence MFE | -37.05 |
| Consensus MFE | -30.19 |
| Energy contribution | -31.22 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11551194 94 + 27905053 GAUACAGAGUAUCUGGCGGAUGGCGAAUGUCGGAUG-------GACCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCUG (((((...)))))........(((((((.(((((((-------(((((((((((((....))))))))).(....).)).)))...)))))).))))))). ( -32.20, z-score = -1.50, R) >droSim1.chr3R 17586157 94 - 27517382 GAUACAGAGUAUCUGGCGGAUGGCGAAUGUCGGAUG-------GCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCCG (((((...))))).(((((((..(((((..((((..-------(((((((((((((....))))))))).(....)))))))))..)))))..))))))). ( -40.50, z-score = -3.32, R) >droSec1.super_0 10721518 94 - 21120651 GAUACAGAGUAUCUGGCGGAUGGCGAAUGUCGGAUG-------GCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCUG (((((...))))).(((((((..(((((..((((..-------(((((((((((((....))))))))).(....)))))))))..)))))..))))))). ( -38.00, z-score = -2.90, R) >droYak2.chr3R 13947356 101 - 28832112 GAUACAGAGUAUCUGGCGGAUGGCGGAUGGCGAAUGUCGGAUGGCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCUG ..........(((((.(....).)))))(((((((.((((((((((((((((((((....))))))))).(....)))))).....)))))).))))))). ( -39.80, z-score = -2.41, R) >droEre2.scaffold_4770 11066329 101 + 17746568 GAUGCAGAGUAUCUGGCGGAUGGCGAAUGUCGGAUGUCGGAUGGCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCUG (((((...)))))........(((((((.((((((..((((..(((((((((((((....))))))))).(....)))))))))..)))))).))))))). ( -40.90, z-score = -2.60, R) >droAna3.scaffold_13340 16156516 95 + 23697760 GAUACAGAGUAUCUGGCGGAUUGCUGAUGGCGGAUGGCGAAUGGCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCCAGAU------ ..........((((((..((((((.((..((.....)).....(((((((((((((....))))))))).(....))))))).))))))))))))------ ( -30.90, z-score = -0.33, R) >consensus GAUACAGAGUAUCUGGCGGAUGGCGAAUGUCGGAUG_______GCCCGGCAAAUGUGUUUGCGUUUGUCACUUUUGGGGCUCUGCGGUUCGAGAUUCGCUG (((((...))))).(((((((..(((((..((((.........(((((((((((((....))))))))).(....)))))))))..)))))..))))))). (-30.19 = -31.22 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:13 2011