| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,546,984 – 11,547,095 |
| Length | 111 |
| Max. P | 0.663252 |
| Location | 11,546,984 – 11,547,095 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.29823 |
| G+C content | 0.44828 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.37 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11546984 111 + 27905053 AAUAAUCCCCCAAUCUCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCCUGAACUU-----------GUGUCGCCUCAAUGGUAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUA ......................((.((((.........)))).))...(((((..-----------.((((((....((((((........)))))).........)))))).....))))) ( -17.72, z-score = -1.54, R) >droSim1.chr3R 17581922 111 - 27517382 AAUAAUCCCCCAAUCCCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCCUGAACUU-----------GUGUCGCCUCAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUA ......................((.((((.........)))).))...(((((..-----------.((((((....((((((........)))))).........)))))).....))))) ( -19.72, z-score = -1.97, R) >droSec1.super_0 10717277 111 - 21120651 AAUAAUCCCCCAAUCCCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCCUGAACUU-----------GUGUCGCCUCAAUGGCAUUUCUCCUUGCCAUCAGCUUCAAGCGACAAAAUUGUUUA ......................((.((((.........)))).))...(((((..-----------.((((((....((((((........)))))).........)))))).....))))) ( -19.72, z-score = -1.91, R) >droYak2.chr3R 13943005 107 - 28832112 --------AAUAAUCCCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCC-GCAACCAA-----CU-UAUGUCGCCUCAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUA --------((((((.......(((((((...................)-)).)))).-----..-..((((((....((((((........)))))).........))))))..)))))).. ( -19.03, z-score = -1.80, R) >droEre2.scaffold_4770 11062164 108 + 17746568 --------AAUAAUCCCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCC-GCAAUUUA-----CUAUAUGUCGCUUCAAUGGCAUUUCUCCUGGCCAUCAGCUUUAAGCGGCAAAAUUGUUUA --------..............((.((((.........)))).))...-(((((((.-----.....((((((((..(((((..........))))).......)))))))))))))))... ( -19.20, z-score = -0.18, R) >droAna3.scaffold_13340 16152764 112 + 23697760 --------AAUAAUCCCC-GAUGGUGCGUAUCAGUUCCGCAUUCCCCCUGCACCUUAUGCCCCCUCAUACCACC-CAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUA --------..........-...((((.((((.((....((((..............))))...)).))))))))-..((((((........))))))......(((((((.....))))))) ( -20.34, z-score = -1.85, R) >consensus ________AACAAUCCCCCAAUGGUGUGUAUCAAUUCCGCAUUCCCCCUGAACUU___________AUGUCGCCUCAAUGGCAUUUCUCCUUGCCAUCAGCUUUAAGCGACAAAAUUGUUUA ..................((((((((((.........))))))........................((((......((((((........))))))..((.....))))))..)))).... (-14.23 = -14.37 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:12 2011