| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,546,068 – 11,546,166 |
| Length | 98 |
| Max. P | 0.527202 |
| Location | 11,546,068 – 11,546,166 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.37 |
| Shannon entropy | 0.26728 |
| G+C content | 0.43018 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.84 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11546068 98 - 27905053 ------GAU-GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCGG-------------- ------..(-(((.(..((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))...).)))).-------------- ( -28.10, z-score = -2.24, R) >droAna3.scaffold_13340 16151860 99 - 23697760 ------GAUGGGUCCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGGGCACGUUUUUGGCUUAGACAAAGUGCCUG-------------- ------...(((..(..((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))...)..))).-------------- ( -26.80, z-score = -1.45, R) >droEre2.scaffold_4770 11061290 98 - 17746568 ------GAU-GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACGGUGCACGUUUUUGGCUUAGACGAAGUGCCGG-------------- ------..(-(((.(..((((...)))).((((.(((((((....))))))).))))(((....((((((((((.....))))))))))...)))...).)))).-------------- ( -31.80, z-score = -3.24, R) >droYak2.chr3R 13942062 98 + 28832112 ------GAU-GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCGG-------------- ------..(-(((.(..((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))...).)))).-------------- ( -28.10, z-score = -2.24, R) >droSec1.super_0 10716363 98 + 21120651 ------GAU-GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCGG-------------- ------..(-(((.(..((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))...).)))).-------------- ( -28.10, z-score = -2.24, R) >droSim1.chr3R 17581024 98 + 27517382 ------GAU-GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCGG-------------- ------..(-(((.(..((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))...).)))).-------------- ( -28.10, z-score = -2.24, R) >droWil1.scaffold_181089 9990730 96 + 12369635 --------GAGGGGCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCU--------------- --------...(((((.((((...)))).((((.(((((((....))))))).))))(((....(((((((((.......)))))))))...)))....)))))--------------- ( -28.50, z-score = -2.42, R) >droPer1.super_6 5971181 119 - 6141320 AGAUGGUCGGUGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAAGGGCCAACGAGCCGCCUGUG ........(((((((..((((...)))).((((.(((((((....))))))).))))((((...(((((((((.......))))))))).....(....)...))))))).)))).... ( -34.70, z-score = -1.37, R) >dp4.chr2 30570386 119 - 30794189 AGAUGGUCGGUGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAAGGGCCAACGAGCCGCCUGUG ........(((((((..((((...)))).((((.(((((((....))))))).))))((((...(((((((((.......))))))))).....(....)...))))))).)))).... ( -34.70, z-score = -1.37, R) >droVir3.scaffold_12855 5189324 95 - 10161210 ---------GGGGGCAGCAAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGCGCACG-UUUUGGCUUAGACGAAGUGCCCG-------------- ---------..((((((((..(((.(((.((((.(((((((....))))))).))))........))).))).)))...((-(((......)))))...))))).-------------- ( -26.00, z-score = -1.06, R) >droMoj3.scaffold_6540 22462639 96 - 34148556 --------GGGAAUCGACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACG-UUUUGGCUUAGGCGAAGUGCCCG-------------- --------(((..(((.((.....((.(((((..(((((((....)))))))...))))).)).(((((((.(.......)-)))))))...)))))....))).-------------- ( -23.60, z-score = -0.63, R) >droGri2.scaffold_14906 4848120 95 + 14172833 ---------CGGGGCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACG-UUUUGGCUUAGACGAAGUGCAGG-------------- ---------...(((((((((...)))).((((.(((((((....))))))).)))).....))))).....(((..(.((-(((......)))))..)..))).-------------- ( -25.70, z-score = -1.44, R) >consensus ______GAU_GGCUCAACCAUUUUGUGGAUUUAUUGACAUUCUGUGAUGUUAUUAAAGUUGAUUGCCAGAGACUGUGCACGUUUUUGGCUUAGACGAAGUGCCGG______________ ..................((((((((...((((.(((((((....))))))).)))).......(((((((.(.......).)))))))....)))))))).................. (-18.88 = -18.84 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:11 2011