| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,530,043 – 11,530,126 |
| Length | 83 |
| Max. P | 0.861178 |
| Location | 11,530,043 – 11,530,126 |
|---|---|
| Length | 83 |
| Sequences | 7 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Shannon entropy | 0.47344 |
| G+C content | 0.42265 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -12.72 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11530043 83 + 27905053 -UACAAGUGGUAACAACUUGGCGAUGUCGUCAAUUGUUACACGUCGAAUGACCAGACCUUUUUGGCACAUUUUU-CGAGCGUCUA -........(((((((.((((((....)))))))))))))((((((((((.(((((....))))))).....))-))).)))... ( -24.10, z-score = -2.14, R) >droAna3.scaffold_13340 16136022 82 + 23697760 -UUCCAGUGCUAACAAAAUUGCGAUAUCGUCAAUUGUUACAUGGCAAAUGACCAGA-CUUUUUGGCACAUUUUU-CCAGCACCUA -.....(((((((((..((((((....)).)))))))))..(((.(((((.(((((-...)))))..)))))..-)))))))... ( -17.90, z-score = -1.79, R) >droEre2.scaffold_4770 11045661 83 + 17746568 -UGCAAGUGGUAACAACUUGGUGAUGUCGUCAAUUGUUACACUUUGAAUGUCCAGACCUUUUUGGCACAUUUUU-CGAGCGUCUA -.(((((((.((((((.(((..(....)..)))))))))))))).(((((((((((....))))).))))))..-...))..... ( -22.50, z-score = -1.63, R) >droYak2.chr3R 13925010 83 - 28832112 -UGCAAGUGGUAACAACUUGGCGAUGUCGUCAAUUGUUACAAGUCGAAUGGCCAGAGCUUUUUGGCACAUUUUU-CGAGCGUCUA -.((.....(((((((.((((((....)))))))))))))...(((((((((((((....)))))).)))...)-)))))..... ( -28.00, z-score = -2.80, R) >droSec1.super_0 10700543 84 - 21120651 -UGCAAGUGGUAACAACUUGGCGAUGUCGUCAAUUCUUACACGUCGAAUGACCAGAUCUUUUUGGCACAUUUUUUCGAGCGUCUA -.((..(((.(((.((.((((((....)))))))).)))))).(((((((.(((((....)))))))......)))))))..... ( -19.30, z-score = -0.54, R) >droSim1.chr3R 17564614 83 - 27517382 -UGCAAGUGGUAACAACUUGGCGAUGUCGUCAAUUGUUACACGUCGAAUGACCAGACCUUUUUGGCACAUUUUU-CGAGCGUCUA -.((.....(((((((.((((((....))))))))))))).((..(((((.(((((....)))))..)))))..-)).))..... ( -25.00, z-score = -2.02, R) >droVir3.scaffold_12963 6505194 84 + 20206255 CGCCCAAUAACAAUAAUAUGAUCAAGUGACCGAUUGACAAAUGGAAAAUUUGGAGCAACCGUUGACA-AUUGUGGCAGUUGGACA .(((((((..((......)).....((.(.((.(((.(((((.....)))))...))).)).).)).-)))).)))......... ( -14.80, z-score = 0.34, R) >consensus _UGCAAGUGGUAACAACUUGGCGAUGUCGUCAAUUGUUACACGUCGAAUGACCAGACCUUUUUGGCACAUUUUU_CGAGCGUCUA ....((((((((((((.((((((....)))))))))))))........((.(((((....))))))))))))............. (-12.72 = -13.50 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:10 2011