| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,521,058 – 11,521,154 |
| Length | 96 |
| Max. P | 0.700579 |
| Location | 11,521,058 – 11,521,154 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.32 |
| Shannon entropy | 0.42820 |
| G+C content | 0.56457 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -15.56 |
| Energy contribution | -17.28 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11521058 96 + 27905053 UGCAAUAGUGCGAUCAUCUGCCUGGCAAUCGUGGCCGCCGUGGCCUCCAUCUCUCAGGUUUCGGCCCAAGCCCAAACAACGCCACAAUCCUGCGCC .......(((((((..((.....))..)))(((((.((((..((((.........))))..))))....(......)...)))))......)))). ( -25.50, z-score = 0.34, R) >droAna3.scaffold_13340 16127553 81 + 23697760 UGCAAAAGUGUGUUGAUUAGUUGGGCCUUUUUGGCU---------GUGAUUUCGGCUGUCUUGGCCCAAAC---A---ACUCCUCAGACUUGUCUU .....((((.((..((....(((((((....(((((---------(......))))))....)))))))..---.---..))..)).))))..... ( -26.70, z-score = -2.64, R) >droEre2.scaffold_4770 11036907 84 + 17746568 UGCAAAAGUGCGAUCGUUUGCCUGGCCAUCGUGGCC---------UCCUUCUCGCAGGUCUUGGCCCAAACCGCA---ACGCCACAAACCUGCGCU .((...((.((((....))))))((((.....))))---------........((((((..((((..........---..))))...)))))))). ( -27.10, z-score = -1.14, R) >droSec1.super_0 10691157 84 - 21120651 UGCAAAAGUGCGAUCAUCUGCCUGGCCAUCGUGGCC---------UGCAUCUCGCAGGUUUUGGCCCAAACCCAA---ACGCCACAAACCUGCGCC ((((..((.(((......)))))((((.....))))---------))))...(((((((((((((..........---..)))).))))))))).. ( -30.80, z-score = -2.72, R) >droSim1.chr3R 17555639 84 - 27517382 UGCAAAAGUGCGAUCAUCUGCCUGGCCAUCGUGGCC---------UGCAUCUCGCAGGCUUUGGCCCAAAACCAA---ACGCCACAAACCUGCGCC .(((....(((((.....(((..((((.....))))---------.)))..)))))((((((((.......))))---).))).......)))... ( -28.40, z-score = -1.83, R) >consensus UGCAAAAGUGCGAUCAUCUGCCUGGCCAUCGUGGCC_________UCCAUCUCGCAGGUUUUGGCCCAAACCCAA___ACGCCACAAACCUGCGCC .(((....)))............((((.....))))................(((((((((((((...............)))).))))))))).. (-15.56 = -17.28 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:09 2011