| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,506,531 – 11,506,589 |
| Length | 58 |
| Max. P | 0.991875 |
| Location | 11,506,531 – 11,506,589 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 73.75 |
| Shannon entropy | 0.48073 |
| G+C content | 0.44362 |
| Mean single sequence MFE | -9.86 |
| Consensus MFE | -6.95 |
| Energy contribution | -7.54 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.50 |
| SVM RNA-class probability | 0.991875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11506531 58 + 27905053 CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCCCAAAA-AACCCAAGG-------- .....((....((((.(((((....))))).))))...)).........-.........-------- ( -10.00, z-score = -3.14, R) >droEre2.scaffold_4770 11022765 58 + 17746568 CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCGAAAAA-AGCCCAAGG-------- .....((....((((.(((((....))))).))))...)).........-.........-------- ( -10.00, z-score = -2.24, R) >droYak2.chr3R 13901229 58 - 28832112 CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCGAAAAA-AGCCCAAGG-------- .....((....((((.(((((....))))).))))...)).........-.........-------- ( -10.00, z-score = -2.24, R) >droSec1.super_0 10677085 59 - 21120651 CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCCCAAAAGAACCCAAGG-------- .....((....((((.(((((....))))).))))...))...................-------- ( -10.00, z-score = -2.70, R) >droSim1.chr3R 17540140 59 - 27517382 CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCCCAAAAGAACCCAAGG-------- .....((....((((.(((((....))))).))))...))...................-------- ( -10.00, z-score = -2.70, R) >droVir3.scaffold_12855 5128679 67 + 10161210 CUUCUUCUCGCCAGCAUCAACAAGUGUUGAAGUAACAUGUUAGAAAGGAACAGCAACAACAACAACA .(((((((.((..((.(((((....))))).)).....)).)).))))).................. ( -8.50, z-score = 0.42, R) >droMoj3.scaffold_6540 22406124 52 + 34148556 ------CGCAUUAACAUCAACAAGUGUUGAGGUAACAUGUUAGAAAGGGACCGCAAGC--------- ------.((.......(((((....)))))(((..(..........)..)))))....--------- ( -10.50, z-score = -1.50, R) >consensus CCCCCGCUCAUUAACAUCAACAAGUGUUGAAGUUAUAUGCUCCCAAAAA_AACCCAAGG________ .....((....((((.(((((....))))).))))...))........................... ( -6.95 = -7.54 + 0.59)
| Location | 11,506,531 – 11,506,589 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 73.75 |
| Shannon entropy | 0.48073 |
| G+C content | 0.44362 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -7.16 |
| Energy contribution | -7.43 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11506531 58 - 27905053 --------CCUUGGGUU-UUUUGGGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG --------(((((.(((-((....)))))...((((.(((((....))))).)))).....))))). ( -14.80, z-score = -1.83, R) >droEre2.scaffold_4770 11022765 58 - 17746568 --------CCUUGGGCU-UUUUUCGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG --------(((((.(((-(......))))...((((.(((((....))))).)))).....))))). ( -16.90, z-score = -2.76, R) >droYak2.chr3R 13901229 58 + 28832112 --------CCUUGGGCU-UUUUUCGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG --------(((((.(((-(......))))...((((.(((((....))))).)))).....))))). ( -16.90, z-score = -2.76, R) >droSec1.super_0 10677085 59 + 21120651 --------CCUUGGGUUCUUUUGGGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG --------(((((.(((((.....)))))...((((.(((((....))))).)))).....))))). ( -17.50, z-score = -2.60, R) >droSim1.chr3R 17540140 59 + 27517382 --------CCUUGGGUUCUUUUGGGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG --------(((((.(((((.....)))))...((((.(((((....))))).)))).....))))). ( -17.50, z-score = -2.60, R) >droVir3.scaffold_12855 5128679 67 - 10161210 UGUUGUUGUUGUUGCUGUUCCUUUCUAACAUGUUACUUCAACACUUGUUGAUGCUGGCGAGAAGAAG ...(((((..((.((((((.......)))).)).))..)))))((((((......))))))...... ( -12.20, z-score = 0.11, R) >droMoj3.scaffold_6540 22406124 52 - 34148556 ---------GCUUGCGGUCCCUUUCUAACAUGUUACCUCAACACUUGUUGAUGUUAAUGCG------ ---------((..(((((..(..........)..)))(((((....))))).))....)).------ ( -8.30, z-score = -1.07, R) >consensus ________CCUUGGGUU_UUUUUGGGAGCAUAUAACUUCAACACUUGUUGAUGUUAAUGAGCGGGGG .........................(..(((.((((.(((((....))))).)))))))..)..... ( -7.16 = -7.43 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:06 2011