| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,481,498 – 11,481,588 |
| Length | 90 |
| Max. P | 0.903666 |
| Location | 11,481,498 – 11,481,588 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Shannon entropy | 0.39000 |
| G+C content | 0.43687 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -11.32 |
| Energy contribution | -12.80 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11481498 90 - 27905053 AAAAAUGUUUGGCUUGCGAAUAGCGGAAAAUUCCGCUUGCAAGGC--CACUGCUGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCGUCC-- ....((((((((((((((...((((((....))))))))))).))--).(((((((.....))))))).............)))))).....-- ( -29.70, z-score = -3.38, R) >droWil1.scaffold_181089 9920844 88 + 12369635 AAAUAUUUUCGUCC------AAAUGAAAAAAGCCGCAUGUUAGGCCAGCGAGCCGUGCACUCUAGUGGCAUAAUUUGAUUAAAACAAGCCGCGA .....(((((((..------..)))))))..((.((.((((.(((......)))((((((....)).))))...........)))).)).)).. ( -19.60, z-score = -0.38, R) >droSim1.chr3R 17514264 90 + 27517382 AAAAAUGUUUGGCCUGCGAAUAGCGGAAAAUUCCGCUUGCAAGGC--CACUGCUGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCGUCC-- ....((((((((((((((...((((((....))))))))).))))--).(((((((.....))))))).............)))))).....-- ( -32.10, z-score = -4.21, R) >droSec1.super_0 10652234 90 + 21120651 AAAAAUGUUUGGCCUGCGAAUAGCGGAAAAUUCCGCUUGCAAGGC--CACUGCUGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCGUCC-- ....((((((((((((((...((((((....))))))))).))))--).(((((((.....))))))).............)))))).....-- ( -32.10, z-score = -4.21, R) >droYak2.chr3R 13875578 93 + 28832112 AAAAAUGUUUGGCCUGCGAAAAGCGGAAAAUUCCGCUUGCAAGGCCACACCACCGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCCAUCC- ....((((((((((((((...((((((....))))))))).)))))........(((.((....)))))............))))))......- ( -24.90, z-score = -2.58, R) >droEre2.scaffold_4770 10997832 87 - 17746568 AAAAAUGUGUGGCCUGCGAAAAGCGGAAAAUUCCGCUUGCAAGGC--CACCGCUGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCC----- ....((((((((((((((...((((((....))))))))).))))--))).(((((.....))))).))))..................----- ( -31.10, z-score = -4.08, R) >droAna3.scaffold_13340 16089680 87 - 23697760 GAGAAUGUUUGGGCCGCGAAAAGUGGAAAAUGCCGCUUGUAAGGC--CACCGUUGUACACUAUGCUAGCAUAAUUUGAUUAAAGCAACC----- .....(((((.((((.....((((((......))))))....)))--)............((((....)))).........)))))...----- ( -20.70, z-score = -0.46, R) >consensus AAAAAUGUUUGGCCUGCGAAAAGCGGAAAAUUCCGCUUGCAAGGC__CACCGCUGUUCACUACAGUAGCAUAAUUUGAUUAAAGCAUCCUCC__ .....(((((.(((((((...(((((......)))))))).))))......(((((.....)))))...............)))))........ (-11.32 = -12.80 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:04 2011