| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,481,191 – 11,481,308 |
| Length | 117 |
| Max. P | 0.995486 |
| Location | 11,481,191 – 11,481,308 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 73.06 |
| Shannon entropy | 0.46788 |
| G+C content | 0.44171 |
| Mean single sequence MFE | -32.35 |
| Consensus MFE | -20.31 |
| Energy contribution | -20.45 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.995486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11481191 117 - 27905053 GUUUGUUUCUGUUUCA----ACUCCUCAACUUUUUGCUGAGUGCAUCAUACCUACUCCUUGUGCU--CUCCACGAGUGUGUCAGAAUAUUUGGAAAAUUUUGACGCAGUCGAGGCGCAAAAUA ................----...........((((((.(((..((..............))..))--).((.(((.(((((((((((.........))))))))))).))).)).)))))).. ( -31.64, z-score = -2.33, R) >droSim1.chr3R 17514077 92 + 27517382 -----------------------------CUUUUUGCUGAGUGCAUCAUAGCUACUCCUUGUGCU--CUCCACGAGUGUGUCAGAAUAUUUGGAAAAUUUUGACGCAGUCGAGGCGCAAAAUA -----------------------------..((((((.(((..((..............))..))--).((.(((.(((((((((((.........))))))))))).))).)).)))))).. ( -31.64, z-score = -3.35, R) >droSec1.super_0 10651933 117 + 21120651 AUUGGUUUCUGUUCCA----ACUCCUCAACUUUUUGCUGAGUGCAUCAUAGCUACUCCUUGUGCU--CUCCACGAGUGUGUCAGAAUAUUUGGAAAAUUUUGACGCAGUCGAGGCGCAAAAUA .((((........)))----)..........((((((.(((..((..............))..))--).((.(((.(((((((((((.........))))))))))).))).)).)))))).. ( -34.14, z-score = -2.46, R) >droYak2.chr3R 13875273 102 + 28832112 -------------------ACUGCUGCCCCUUUUUGGCAAGUGUAUCAUAGCUACUCCUCGUGCU--GUUCAUGAGUAUGUCAGAAUAUUUGGAAUAUUUUGACGCAGUCGAGGCGCAAAAUA -------------------..(((((((.......)))).................(((((.(((--((..........((((((((((.....)))))))))))))))))))).)))..... ( -26.80, z-score = -0.91, R) >droEre2.scaffold_4770 10997526 119 - 17746568 GUUGGUAUCUGUUCCAGGGUACGCU-CACCUUUUUGGCAAGUGUAGCAUACCCACUCC-CGUGCU--GUCCAUGAGUGUGUCAGAAUAUUUGGAAUAUUUUGACGCAGUCGAGGCGCAAAAUA ((.((((((((...)))(.((((((-..((.....))..)))))).)))))).))...-.(((((--.....(((.(((((((((((((.....))))))))))))).))).)))))...... ( -40.90, z-score = -2.92, R) >droAna3.scaffold_13340 16089375 92 - 23697760 -------------------------------UUUCCCCCAGUGCAUCGCACUUGGUCUUCAUGUUCGCUCCAUGUCUGUGUCAGAAUAUUUGGAAAUUUUUGACGCAGUCGAGGCGCAAAAUG -------------------------------.....((.(((((...))))).))...........((.((.((.(((((((((((...........))))))))))).)).)).))...... ( -29.00, z-score = -2.90, R) >consensus ____________________AC_C__CA_CUUUUUGCCGAGUGCAUCAUACCUACUCCUCGUGCU__CUCCACGAGUGUGUCAGAAUAUUUGGAAAAUUUUGACGCAGUCGAGGCGCAAAAUA ........................................((((.((..........((((((.......))))))(((((((((((.........)))))))))))...)).))))...... (-20.31 = -20.45 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:18:03 2011