| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,434,094 – 11,434,150 |
| Length | 56 |
| Max. P | 0.972065 |
| Location | 11,434,094 – 11,434,150 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 66.87 |
| Shannon entropy | 0.63409 |
| G+C content | 0.65246 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -15.59 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11434094 56 + 27905053 GACUUAGGCUAAU-CCGCGUAGCUGCGCUGCCGGGUACGCCAGCAGCGGAGCGGCGU ......((.....-))((((.(((.((((((.((.....)).)))))).))).)))) ( -24.80, z-score = -0.54, R) >droSim1.chr3h_random 107942 54 - 1452968 --CUUAGCCUAAG-UCGAAGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGC --..........(-(((.......(((((((.(((...))).)))))))..)))).. ( -22.50, z-score = -1.28, R) >droSec1.super_16 1858356 54 - 1878335 --CUUAGCCUAAG-UCGAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGC --.....(((...-...))).((.(((((((.(((...))).))))))).))..... ( -23.50, z-score = -1.19, R) >droYak2.chrX_random 539170 56 + 1802292 GUCGAAGGCUAAG-CCGCGUAGCUGCGCUGCCGGAUACGACAGCAGCGGAGCGGCUC ...........((-((((....((((((((.((....)).)))).)))).)))))). ( -25.30, z-score = -1.23, R) >droEre2.scaffold_4855 7559 55 + 242605 GGCUAAACCUAAAACCGCGUAGCUGCGCUGCCAGCUACGCCAGCAGCGGAGCGGC-- ..............(((((((((((......)))))))((.....))...)))).-- ( -18.60, z-score = 0.55, R) >droAna3.scaffold_13417 2534365 51 - 6960332 -----AACUUACG-AUACAAGACUGCGCUGCUGCAGAGGGCAGCGGCUGAGCGUCAG -----........-......(((.((((((((((.....))))))))...))))).. ( -19.00, z-score = -1.55, R) >consensus __CUUAGCCUAAG_CCGCGUAGCUGCGCUGCCGGCUACGCCAGCAGCGGAGCGGCGC .....................(((.((((((.((.....)).)))))).)))..... (-15.59 = -16.23 + 0.64)
| Location | 11,434,094 – 11,434,150 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 66.87 |
| Shannon entropy | 0.63409 |
| G+C content | 0.65246 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -16.98 |
| Energy contribution | -17.57 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11434094 56 - 27905053 ACGCCGCUCCGCUGCUGGCGUACCCGGCAGCGCAGCUACGCGG-AUUAGCCUAAGUC .(((.(((.(((((((((.....))))))))).)))...))).-............. ( -24.60, z-score = -1.39, R) >droSim1.chr3h_random 107942 54 + 1452968 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCUUCGA-CUUAGGCUAAG-- ..(((((.(((((((.(((...))).))))))).)).....))-)..........-- ( -22.50, z-score = -0.50, R) >droSec1.super_16 1858356 54 + 1878335 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCCUCGA-CUUAGGCUAAG-- ..(((((.(((((((.(((...))).))))))).)).....))-)..........-- ( -22.50, z-score = -0.35, R) >droYak2.chrX_random 539170 56 - 1802292 GAGCCGCUCCGCUGCUGUCGUAUCCGGCAGCGCAGCUACGCGG-CUUAGCCUUCGAC (((((((...((((((((((....)))))..)))))...))))-))).......... ( -25.70, z-score = -2.09, R) >droEre2.scaffold_4855 7559 55 - 242605 --GCCGCUCCGCUGCUGGCGUAGCUGGCAGCGCAGCUACGCGGUUUUAGGUUUAGCC --((.(((.((((((..((...))..)))))).)))...))((((........)))) ( -24.00, z-score = -0.55, R) >droAna3.scaffold_13417 2534365 51 + 6960332 CUGACGCUCAGCCGCUGCCCUCUGCAGCAGCGCAGUCUUGUAU-CGUAAGUU----- (((.((((.....(((((.....))))))))))))........-........----- ( -14.00, z-score = -0.15, R) >consensus GCGCCGCUCCGCUGCUGGCGUAGCCGGCAGCGCAGCUACGCGG_CUUAGGCUAAG__ .....(((.(((((((((.....))))))))).)))..................... (-16.98 = -17.57 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:57 2011