| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,414,338 – 11,414,448 |
| Length | 110 |
| Max. P | 0.697082 |
| Location | 11,414,338 – 11,414,448 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.37 |
| Shannon entropy | 0.35062 |
| G+C content | 0.33810 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.92 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11414338 110 + 27905053 ACGAAAUGCUCUUACAAGGGGUAUAGCGAAAAGGAAAUGAGCCAUAUCCAAAAAUAGAAGUCUUACAAGAUAAUUGCUAAUCUAAAAGUAUAAAUAGAUUAACUGAAAUA .....(((((((.....))))))).((((...(((.(((...))).)))..........((((....))))..))))(((((((..........)))))))......... ( -17.10, z-score = -0.77, R) >droSim1.chr3R 17457210 84 - 27517382 ACGAAAUGCUCUUACAAGGGGUAUGGCGAAAAGGAUAAUAGCCAUAUCCGAAGAUAUAAGUCCUGAAA------------UCUAUCAGUAUAAGUA-------------- ......((((..(((...(((((((((.............)))))))))((((((............)------------))).)).)))..))))-------------- ( -20.42, z-score = -2.15, R) >droSec1.super_0 10598794 84 - 21120651 ACGGAAUGCUCUUACAAGGGGUAUGGCGAAAAGAAUAAUAGCCAUAUUCGAAGAUAUAAGUCCUACAA------------UCUAUAAGUAUAAGUA-------------- ......((((..(((...(((((((((.............)))))))))..((((............)------------)))....)))..))))-------------- ( -16.62, z-score = -1.23, R) >consensus ACGAAAUGCUCUUACAAGGGGUAUGGCGAAAAGGAUAAUAGCCAUAUCCGAAGAUAUAAGUCCUACAA____________UCUAUAAGUAUAAGUA______________ ......((((..(((...(((((((((.............)))))))))...(((....))).........................)))..)))).............. (-13.14 = -13.92 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:52 2011