| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,540,740 – 7,540,856 |
| Length | 116 |
| Max. P | 0.633745 |
| Location | 7,540,740 – 7,540,856 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15482 |
| G+C content | 0.29934 |
| Mean single sequence MFE | -25.03 |
| Consensus MFE | -17.74 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7540740 116 + 23011544 UUAAGAUAGCUUAAAGUUAAGUUCAUUAAGUCAAGUAUUUUU-AUUAAAUGCUACAAAAUGAAUAGGGGCACAGUUUAAGCCCCACUCUUAGCUAUUCUUAUUAUUCAAUACCAUAA .((((((((((...(((...(((((((..((..(((((((..-...)))))))))..))))))).(((((.........))))))))...))))).)))))................ ( -29.80, z-score = -4.57, R) >droSim1.chr2L 7338210 117 + 22036055 UUAAGAUAGCUUAAAGUUAAGUUCAUUAAGUCAAGUAUUUUUUAUUGAAUGCUACCAAAUGGCUAGGGGAAAAGUUUGAGCCCCACUCUUAGCUAUUCCUAUUAUUCAAUACCAUUA ((((...((((((....))))))..)))).............(((((((((.((...((((((((((((....((....))....))))))))))))..)).)))))))))...... ( -23.20, z-score = -0.87, R) >droSec1.super_3 3056823 111 + 7220098 UUAAGAUAGCUUAAAGUUAAGUUCAUUAAGUCAAGUAUUUUUUAUUGAAUGCGAAAAAAUGGCUAGGGGCAAAGUUUGAUCCCAACUCUUAGCUAUU------AUUCAAUACCAUUA ....(((((((...((((.(((.((((...((..((((((......))))))))...))))))).((((((.....)).))))))))...)))))))------.............. ( -22.10, z-score = -1.27, R) >consensus UUAAGAUAGCUUAAAGUUAAGUUCAUUAAGUCAAGUAUUUUUUAUUGAAUGCUACAAAAUGGCUAGGGGCAAAGUUUGAGCCCCACUCUUAGCUAUUC_UAUUAUUCAAUACCAUUA ....(((((((...(((...........((((((((((((......)))))))......))))).((((...........)))))))...))))))).................... (-17.74 = -18.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:53 2011