| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,405,065 – 11,405,159 |
| Length | 94 |
| Max. P | 0.550356 |
| Location | 11,405,065 – 11,405,159 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 60.33 |
| Shannon entropy | 0.83912 |
| G+C content | 0.50109 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -6.01 |
| Energy contribution | -5.80 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11405065 94 + 27905053 ACAAGCCUAAGCCGAUCCGCGUCGGCUUAAU-GUCGAUUACACAAUCGACUUGUAGGGAACC------------GGCUUGCCUCCGUCUUGUUUGAACUGCAGUCGC .(((((((((((((((....)))))))))..-(((((((....)))))))............------------))))))....((.((.((.......)))).)). ( -30.60, z-score = -1.91, R) >droSim1.chr3R 17447964 94 - 27517382 ACAAGCCUAAGCCGAUCCGCGUCGGCUUAAU-GUCGAUUACACAAUCGACUUGUAGGGUACC------------GGCUUGGCUCCGUCUUGUUUGAACUGCAGUCGC .(((((((((((((((....)))))))))..-(((((((....)))))))............------------))))))((....((......))...))...... ( -32.40, z-score = -2.09, R) >droSec1.super_0 10589512 94 - 21120651 ACAAGCCUAAGCCGAUCCGCGUCGGCUUAAU-GUCGAUUACACAAUCGACUUGUAGGGUACC------------GGCUUGGUUCCGUCUUAUUUGAACUGCAAUCGC .(((((((((((((((....)))))))))..-(((((((....)))))))............------------))))))((((.(......).))))......... ( -31.20, z-score = -2.64, R) >droYak2.chr3R 13811911 106 - 28832112 ACAAGCCUAAGCCGAUCCACGUCGGCUUAAU-GUCGAUUACACAAUCGACUGGCAGGCUACGAGCUUGGGUGCCGGCUUGGCUCCGACUUGUUUGAACUGCAGUCGC .(((((((((((((((....)))))))))..-(((((((....))))))).(((((((.....)))....))))))))))....(((((.((.......))))))). ( -42.50, z-score = -3.01, R) >droEre2.scaffold_4770 10933601 75 + 17746568 ACAAGCCUAAGCCGAUCCACGUCGGCUUAAU-GUCGAUUACACAAUCGACUGGCUGGCUGU----------------UUGAACUGCAGUCGC--------------- ...(((((((((((((....)))))))))..-(((((((....))))))).))))((((((----------------.......))))))..--------------- ( -32.60, z-score = -5.08, R) >droAna3.scaffold_13340 16028020 92 + 23697760 ACAAGCCUAAGCCAGUCCUCGUCGGCUUAAU-GUCGAUUACACAAUCGACUUGUCGGCUCCG--------------CUUGGAUCCGAACUGUUUGUCCUCCUGACAC ((((((.((((((..........))))))..-(((((((....)))))))...((((.(((.--------------...))).))))...))))))........... ( -26.10, z-score = -2.17, R) >droWil1.scaffold_181089 9857878 96 - 12369635 ACAAGCCUAAGCCUCGCGAUGUCGGCUUAAU-GAUGAUUACACAAU--GUUCAUGGACUGCA--------CCAGACGUCACUAUUUACACACACACACUACAUGCGU ....((....((...))((((((.((...((-((..(((....)))--..)))).....)).--------...))))))........................)).. ( -13.30, z-score = 1.66, R) >droMoj3.scaffold_6540 22298030 98 + 34148556 ACAAUCCUAAGUCUGGGGACGUCGGCUUAGU-GACGAUUGCACAAU-GACC---UGACAAUUCACGAA---CUUUUUGUCGGGUCCAUUCAACUGU-UUACAUGCGU .((((((((((((((....))..))))))).-...)))))......-((((---((((((........---....))))))))))...........-.......... ( -26.30, z-score = -1.03, R) >droGri2.scaffold_14906 4683986 101 - 14172833 ACAAUCCUAAGUCUGGUGACGUCGGCUUAGUUGAGGAUUACACAAU-GAUGGGACGACAACUUGCCAU---CAGCACUGCCGGUCCAUUCCGGUAU-UUACA-GCGA .......((((((((....))..))))))((((............(-(((((.(........).))))---))....((((((......)))))).-...))-)).. ( -26.70, z-score = -0.15, R) >droVir3.scaffold_12855 5018646 94 + 10161210 ACAAUCCUAAGUCUCGGGACGUCGGCUUAGU-GACGAUUACACAAU-GACC---UGACAAUUCCCUA------CUUUGUCGGA-CCAUUCAACUAU-UUACAUGUGA ....(((((((((.((...))..))))))).-))......((((((-(..(---((((((.......------..))))))).-.)))........-.....)))). ( -17.51, z-score = 0.29, R) >consensus ACAAGCCUAAGCCGAUCCACGUCGGCUUAAU_GUCGAUUACACAAUCGACUUGUAGGCUACC____________GGCUUGGCUCCGACUCGUUUGAACUACAGGCGC .......((((((..........)))))).............................................................................. ( -6.01 = -5.80 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:52 2011