| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,404,196 – 11,404,286 |
| Length | 90 |
| Max. P | 0.590026 |
| Location | 11,404,196 – 11,404,286 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.52521 |
| G+C content | 0.38932 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -10.59 |
| Energy contribution | -10.67 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11404196 90 + 27905053 -------UUUUUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCCAGCGUUUUCUGCGUGGA---------UUUCCCUUUGUUCAGCUAC-- -------..(((((((.-((.(((((((......))))))).)))))))))....(((((...)))))....((.((((---------(........)))))))...-- ( -20.70, z-score = -1.21, R) >droSim1.chr3R 17447092 90 - 27517382 -------UUUUUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGAGAAUCGAAUUAUGAUGCCCAGCGUUUUCUGCGUGGA---------UUUCUCUUUGUUCAGCCAG-- -------.....(((((-...(((((((......)))))))..)))))((((...((...(((.(((.....)))))).---------..)).....))))......-- ( -18.80, z-score = 0.07, R) >droSec1.super_0 10588642 90 - 21120651 -------UUUUUGAUUU-GUACAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCCAGCGUUUUCUGCGUGGA---------UUUCCCUUUGUUCAGCCAC-- -------..(((((((.-((.(((((((......))))))).)))))))))....(((((...)))))....((.((((---------(........)))))))...-- ( -18.20, z-score = -0.60, R) >droYak2.chr3R 13810881 95 - 28832112 UUUUUGAUUUGUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCCAGCGUUUGCGUGGUU-----------UUCCCCAUUGUUCAGCCAC-- ....(((((((....((-((.(((((((......))))))).)))).))))))).(((((...)))))...((((((-----------.............))))))-- ( -21.72, z-score = -0.90, R) >droEre2.scaffold_4770 10932825 90 + 17746568 -------UUUUUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCCAGCGUUUUCUCUGCGGU---------UUUCCCUUUGUUCAGCCAC-- -------.....((((.-((.(((((((......))))))).))))))((((...((.((((((.(....).))).)))---------..)).....))))......-- ( -21.00, z-score = -1.58, R) >droAna3.scaffold_13340 16027344 99 + 23697760 -------UUUCUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCGAACGUUUUCGGUUUUCGGUAAGGAUUUUUCCCUUUGUUCGGCUAC-- -------.(((.((((.-((.(((((((......))))))).))))))))).......((((((((...(((.....)))...(((....)))...))))))))...-- ( -27.90, z-score = -2.36, R) >dp4.chr2 30409696 80 + 30794189 -------UUUCUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCUGGCGUUU-------------------UGCUCCUUUGUUCAGCUAC-- -------.(((.((((.-((.(((((((......))))))).)))))))))..........((((....-------------------.((......))...)))).-- ( -16.50, z-score = -0.48, R) >droPer1.super_6 5804435 80 + 6141320 -------UUUCUGAUUU-GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCUGGCGUUU-------------------UGCUCCUUUGUUCAGCUAC-- -------.(((.((((.-((.(((((((......))))))).)))))))))..........((((....-------------------.((......))...)))).-- ( -16.50, z-score = -0.48, R) >droWil1.scaffold_181089 2513007 93 + 12369635 ------UUUUGUGAUUUUGUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAU--CGUUUUGAAUUGUGUGUAUACAA--------UUUUCCUUGAUUCAGGGGUUC ------....((((((((((.(((((((......))))))).)))...)))))))--......((((((((....)))))--------)))((((((...))))))... ( -21.00, z-score = -1.30, R) >droVir3.scaffold_12855 5016176 77 + 10161210 -------UUUGUGAUUUUGUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUAACGCCUGACAUUUUUG-----------------UGU-UCGUGUACC------- -------..(((((((((((.(((((((......))))))).)))...))))))))((((..(((((....)-----------------)))-).))))...------- ( -20.30, z-score = -2.46, R) >droMoj3.scaffold_6540 22296374 83 + 34148556 -------UUUGUGAUUUUGUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUUGCGCCUGACAUUUCUG-----------------CGUGUCUCGCUCUAUGCC-- -------...((((((((((.(((((((......))))))).)))...))))))).(((...(((((.....-----------------.))))).)))........-- ( -20.60, z-score = -1.34, R) >droGri2.scaffold_14906 4682169 77 - 14172833 -------UUUGUGAUUUUGUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUUACGGCUGAGAUUUUUA-----------------UAU-UCGUGUUCC------- -------.(((((((.((((.(((((((......))))))).)))).......)))))))............-----------------...-.........------- ( -13.50, z-score = -0.09, R) >consensus _______UUUGUGAUUU_GUGCAUUCGAUUUCAUUUGAGUGGACAAUCGAAUUAUGAUGCCUAGCGUUUUCU___U____________UUUCCCUUUGUUCAGCCAC__ ...........(((((..((.(((((((......))))))).)))))))............................................................ (-10.59 = -10.67 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:51 2011