| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,403,057 – 11,403,152 |
| Length | 95 |
| Max. P | 0.617153 |
| Location | 11,403,057 – 11,403,152 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.12 |
| Shannon entropy | 0.47982 |
| G+C content | 0.46421 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -9.54 |
| Energy contribution | -10.26 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11403057 95 - 27905053 ----UCGGGGAGUGUGUGUG----UCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCCG-CCCCGCAUCCACACCACUCC ----....((((((.(((((----......((((((...........(((((((......))))))))))))).........(-(...))...))))))))))) ( -25.50, z-score = -2.66, R) >droAna3.scaffold_13340 16026095 97 - 23697760 ----UGCGGGACUGUGUGCGUAUCUCAUCCGUUAGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCUGCCCCCGCCACCUCGCCCG--- ----.(((((((.(((.((...............))))).)))...((((((((......))))))))..................))))...........--- ( -18.26, z-score = -0.20, R) >droEre2.scaffold_4770 10931729 92 - 17746568 ------UGGGAGUGUGUGUG----CCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCCG--CCCGCAUCCACUCCACUCC ------..((((((..((((----.....((..((.(((.((....((((((((......))))))))...))))).))..))--..))))..))))))..... ( -24.80, z-score = -3.10, R) >droSec1.super_0 10587501 95 + 21120651 ----UCUGAGAGUGUGUGUG----UCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCCG-CCCCGCAUCCACACCACUCC ----.....(((((.(((((----......((((((...........(((((((......))))))))))))).........(-(...))...)))))))))). ( -23.20, z-score = -3.52, R) >droSim1.chr3R 17445513 95 + 27517382 ----UCUGGGAGUGUGUGUG----UCAUCCGUUUGCCAUUGUCAUUUAUUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCCG-CCCCGCAUCCACACCAGUCC ----.((((..(((..((((----.....((..((.(((.((.......(((((......)))))......))))).))..))-...))))..))).))))... ( -20.22, z-score = -1.56, R) >droWil1.scaffold_181089 9855402 74 + 12369635 -------------GUGUGUG----UCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCCCCAAACUGAAUG------------- -------------.......----...((.(((((....(((....((((((((......))))))))...)))......))))).))...------------- ( -9.70, z-score = -0.51, R) >droPer1.super_6 5802595 97 - 6141320 UAGGGUAGGGUGUGUGUGGGAGUGCCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUACU-CCCUGCAGCACAGG------ ....((((((.(((((..(((......)))((((((...........(((((((......)))))))))))))....))))).-))))))........------ ( -29.40, z-score = -1.46, R) >dp4.chr2 30407856 97 - 30794189 UAGGGUAGGGUGUGUGUGGGAGUGCCAUCCGUUUUCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUACU-CCCUGCCGCACAGG------ ...(((((((.(((((..((((.((.....)).))))..(((....((((((((......))))))))...)))...))))).-))))))).......------ ( -29.20, z-score = -1.86, R) >consensus ____UCUGGGAGUGUGUGUG____UCAUCCGUUUGCCAUUGUCAUUUAGUUAAGAGUUUCCUUAAUUGCAAACAUGUCAUCCG_CCCCGCAUCCACACCA____ .......(((...(..((.......))..)((((((...........(((((((......)))))))))))))............)))................ ( -9.54 = -10.26 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:50 2011