| Sequence ID | dm3.chr3R |
|---|---|
| Location | 11,387,095 – 11,387,202 |
| Length | 107 |
| Max. P | 0.849235 |
| Location | 11,387,095 – 11,387,202 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.48138 |
| G+C content | 0.39587 |
| Mean single sequence MFE | -17.20 |
| Consensus MFE | -10.73 |
| Energy contribution | -10.19 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 11387095 107 - 27905053 --UAUCUCCUCACUUAACCGCACUUUUUUUGUGGC--UCGUUGCCAUUACUUAAUUGAACUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUUCGGACCCGAC --...............(((((.((.....(((((--.....))))).....)).))........(((((.((........)).)))))..)))......(((....))). ( -17.80, z-score = -1.72, R) >droSim1.chr3R 17429737 107 + 27517382 --UAUCUCCUCACUUAACCGCACUUUUUGUGUGGC--UCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGAC --...............((((((.....)))))).--(((...((....................(((((.((........)).)))))...(((....)))))...))). ( -21.90, z-score = -2.69, R) >droSec1.super_0 10571642 107 + 21120651 --UAUCUCCUCACUUAACCGCACUUUUUGUGUGGC--UCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGAC --...............((((((.....)))))).--(((...((....................(((((.((........)).)))))...(((....)))))...))). ( -21.90, z-score = -2.69, R) >droYak2.chr3R 13793397 109 + 28832112 AGUAUCUCCACACCUAACCGCACUUUUUGUGUGGC--UCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCUGUUCCCGAC .................((((((.....)))))).--..((((......................(((((.((........)).))))).(((((....)))))...)))) ( -18.80, z-score = -1.30, R) >droEre2.scaffold_4770 10916303 107 - 17746568 --UAUCUGCCCUCCUAACCGCACUUUUUGUGUGGC--UCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGCUCCCGAC --...............((((((.....)))))).--(((..((.....................(((((.((........)).)))))...(((....)))))...))). ( -20.40, z-score = -2.54, R) >droAna3.scaffold_13340 16009703 85 - 23697760 ----------------UGCUUUUUUUCUCAAUUUC----GUUGCCAUUACUUAAUUGAAUCGACUGAAAAUACCUUCCUUUGUCUUUGCCCGGGUCAUGUUUUAU------ ----------------...........((((((..----((.......))..))))))........((((((....(((..((....))..)))...))))))..------ ( -6.90, z-score = 1.12, R) >droWil1.scaffold_181089 9840809 102 + 12369635 -------ACAUAGCGAAAUCUUUUUUUCGAGUUUCCCUUGUUGCCAUUACUUAAUUGAAUUGAGUGCAAAUACUUGACUUUGUUUUUGUCAGUUUUUUUUUUCGAUGAC-- -------......(((((......)))))...............((((....((..((((((...(((((.((........)).)))))))))))..))....))))..-- ( -12.70, z-score = 0.45, R) >consensus __UAUCUCCUCACCUAACCGCACUUUUUGUGUGGC__UCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGAC .................((((((.....))))))...............................(((((.((........)).)))))..((((....))))........ (-10.73 = -10.19 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:17:48 2011